PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G224300.2.p
Common NameSb02g026510, SORBIDRAFT_02g026510
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 423aa    MW: 45243.6 Da    PI: 9.6413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G224300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.54.4e-0926568127
                   NAM  68 yatgkrknratk..sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                           y +g r+ r+t+  +g+Wka+  +kev +k   +  + ++ +L +++g  +k ++t+W+m e +
  Sobic.002G224300.2.p   2 YGNGVRPARKTRdgRGRWKASTASKEVDQKvvCNGITFCRSVLNYFEGVPKKEVRTKWIMLELK 65 
                           67899999999855678********999988877789***********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.778193IPR003441NAC domain
SuperFamilySSF1019415.1E-11293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MYGNGVRPAR KTRDGRGRWK ASTASKEVDQ KVVCNGITFC RSVLNYFEGV PKKEVRTKWI  60
MLELKVPCFE IKLDKPGPKN MLDEYVVCKI YVSPQHKKKA DAYEEGTSSA CDGDEQAFSP  120
TQHGQGTAGS MFSEKQAGKR PMLEKVRPGS LGIASSTQAS STQYFSAPGG QGQPTGAAHS  180
SQAPQMPPPQ RQAGAFQSQS LLVQQQPTQQ TPVQYQSFPD ARVDHHPFGQ TTATMTTRRP  240
PALENLGVPG NPPRRDPGTA FRPLVSLQCH YDQNYRGVKP PANASSSQPQ MLAATSFLPP  300
PQLPFFNGDA NRRGAATAAA GVAPYGSYPY QSRSLTLEGA GQDGASNGTN GAPRFNVNIN  360
DEQFFVDLAM TTSNTSLMTG ARTQTAPAPA RLVQSQPPPP AGAAQLETET GEASGLNKKD  420
AV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G224300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460324.20.0protein ATAF2
TrEMBLA0A1B6QCV60.0A0A1B6QCV6_SORBI; Uncharacterized protein
STRINGSb02g026510.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-07NAC domain containing protein 47