PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G221400.2.p
Common NameSb02g026230, SORBIDRAFT_02g026230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 469aa    MW: 50264.8 Da    PI: 8.4198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G221400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.6e-063658123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++Cg+ F r  nL+ H r+H
  Sobic.002G221400.2.p 36 YVCEICGQGFQRDQNLQMHRRRH 58
                          9*********************9 PP
2zf-C2H211.70.00079115136223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C  C+k +  +s++k H++t+
  Sobic.002G221400.2.p 115 ACARCSKAYAVHSDYKAHLKTC 136
                           6*******************98 PP
3zf-C2H210.90.0015144162523
                           TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                           dCg++Fsr +++  H+ t+
  Sobic.002G221400.2.p 144 DCGRVFSRVESFIEHQDTC 162
                           9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-53558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.73E-63558No hitNo description
SMARTSM003550.00323658IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6353658IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SMARTSM0035511078108IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4105135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.73E-6109134No hitNo description
SMARTSM00355230114141IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MPATCSNARE GTAMAADPDA EVVSLSPRTL LESDRYVCEI CGQGFQRDQN LQMHRRRHKV  60
PWKLLKREAG EAARKRVFVC PEPSCLHHDP SHALGDLVGI KKHFRRKHSG QRQWACARCS  120
KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD TCNAGRARAD AASPACGAGV  180
AAAASAGSQQ QAPPAMSLSR TASSTRTSPS SDIAISPVAW PGSAPAIPSP TTAAFHRFEQ  240
VPSPRTPPSD HRRGGHHNLE LQLMPPSCGG APRTPAAVPP QSHHAAAMQL QLSIGVCGGG  300
IGDDAGERGG EVVMLAAAAR EKEEEAREQL RQAVAEKAAA DEARAQAKRH AELAEQELAS  360
AKRMRRQAQV ELSRAHALRE HAVRQVNATL LQITCLGCRH KFRARAPQLM MDAAVAGPEV  420
ACSYMSSVVT AEGGDAEVVD DEPPPLDGAD AMLQRRRQQH AMAMDVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17110164357Zinc finger protein JACKDAW
5b3h_F2e-17110164357Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G221400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336800.0CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460306.10.0protein indeterminate-domain 16
TrEMBLA0A1W0W5I30.0A0A1W0W5I3_SORBI; Uncharacterized protein
STRINGSb02g026230.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.19e-96indeterminate(ID)-domain 14