PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G221400.2.p | ||||||||
Common Name | Sb02g026230, SORBIDRAFT_02g026230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 469aa MW: 50264.8 Da PI: 8.4198 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.6e-06 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Sobic.002G221400.2.p 36 YVCEICGQGFQRDQNLQMHRRRH 58 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00079 | 115 | 136 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Sobic.002G221400.2.p 115 ACARCSKAYAVHSDYKAHLKTC 136 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0015 | 144 | 162 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Sobic.002G221400.2.p 144 DCGRVFSRVESFIEHQDTC 162 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 35 | 58 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.73E-6 | 35 | 58 | No hit | No description |
SMART | SM00355 | 0.0032 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 36 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 78 | 108 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 105 | 135 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.73E-6 | 109 | 134 | No hit | No description |
SMART | SM00355 | 230 | 114 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MPATCSNARE GTAMAADPDA EVVSLSPRTL LESDRYVCEI CGQGFQRDQN LQMHRRRHKV 60 PWKLLKREAG EAARKRVFVC PEPSCLHHDP SHALGDLVGI KKHFRRKHSG QRQWACARCS 120 KAYAVHSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD TCNAGRARAD AASPACGAGV 180 AAAASAGSQQ QAPPAMSLSR TASSTRTSPS SDIAISPVAW PGSAPAIPSP TTAAFHRFEQ 240 VPSPRTPPSD HRRGGHHNLE LQLMPPSCGG APRTPAAVPP QSHHAAAMQL QLSIGVCGGG 300 IGDDAGERGG EVVMLAAAAR EKEEEAREQL RQAVAEKAAA DEARAQAKRH AELAEQELAS 360 AKRMRRQAQV ELSRAHALRE HAVRQVNATL LQITCLGCRH KFRARAPQLM MDAAVAGPEV 420 ACSYMSSVVT AEGGDAEVVD DEPPPLDGAD AMLQRRRQQH AMAMDVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-17 | 110 | 164 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 2e-17 | 110 | 164 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G221400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833680 | 0.0 | CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460306.1 | 0.0 | protein indeterminate-domain 16 | ||||
TrEMBL | A0A1W0W5I3 | 0.0 | A0A1W0W5I3_SORBI; Uncharacterized protein | ||||
STRING | Sb02g026230.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 9e-96 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G221400.2.p |
Entrez Gene | 8081028 |