PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G221400.1.p | ||||||||
Common Name | Sb02g026230, SORBIDRAFT_02g026230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 53450.5 Da PI: 8.6343 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.8e-06 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Sobic.002G221400.1.p 67 YVCEICGQGFQRDQNLQMHRRRH 89 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00085 | 146 | 167 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Sobic.002G221400.1.p 146 ACARCSKAYAVHSDYKAHLKTC 167 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0016 | 175 | 193 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Sobic.002G221400.1.p 175 DCGRVFSRVESFIEHQDTC 193 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.33E-6 | 66 | 89 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 136 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.33E-6 | 140 | 165 | No hit | No description |
SMART | SM00355 | 230 | 145 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MLGFCAPAAG PPPDEATPEP FRSLQIATCT AAAAATTKKK RRPAGTPDPD AEVVSLSPRT 60 LLESDRYVCE ICGQGFQRDQ NLQMHRRRHK VPWKLLKREA GEAARKRVFV CPEPSCLHHD 120 PSHALGDLVG IKKHFRRKHS GQRQWACARC SKAYAVHSDY KAHLKTCGTR GHSCDCGRVF 180 SRVESFIEHQ DTCNAGRARA DAASPACGAG VAAAASAGSQ QQAPPAMSLS RTASSTRTSP 240 SSDIAISPVA WPGSAPAIPS PTTAAFHRFE QVPSPRTPPS DHRRGGHHNL ELQLMPPSCG 300 GAPRTPAAVP PQSHHAAAMQ LQLSIGVCGG GIGDDAGERG GEVVMLAAAA REKEEEAREQ 360 LRQAVAEKAA ADEARAQAKR HAELAEQELA SAKRMRRQAQ VELSRAHALR EHAVRQVNAT 420 LLQITCLGCR HKFRARAPQL MMDAAVAGPE VACSYMSSVV TAEGGDAEVV DDEPPPLDGA 480 DAMLQRRRQQ HAMAMDVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-17 | 141 | 195 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 2e-17 | 141 | 195 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 41 | KKKRR |
2 | 37 | 42 | KKKRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G221400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369631 | 0.0 | AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03. | |||
GenBank | AK373595 | 0.0 | AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460306.1 | 0.0 | protein indeterminate-domain 16 | ||||
TrEMBL | C5X268 | 0.0 | C5X268_SORBI; Uncharacterized protein | ||||
STRING | Sb02g026230.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-101 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G221400.1.p |
Entrez Gene | 8081028 |