PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G220300.1.p
Common NameSb02g026150, SORBIDRAFT_02g026150
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 370aa    MW: 39124.8 Da    PI: 7.3979
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G220300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17187241256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 241
                           788899***********************************************98 PP
2HD-ZIP_I/II126.31.3e-40187277192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr 
  Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR- 274
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 elk 92 
                           +lk
  Sobic.002G220300.1.p 275 ALK 277
                           555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17176237IPR009057Homeodomain-like
SuperFamilySSF466892.91E-18178244IPR009057Homeodomain-like
PROSITE profilePS5007116.989183243IPR001356Homeobox domain
SMARTSM003891.0E-15185247IPR001356Homeobox domain
CDDcd000868.59E-16187244No hitNo description
PfamPF000464.4E-15187241IPR001356Homeobox domain
PROSITE patternPS000270218241IPR017970Homeobox, conserved site
PfamPF021831.4E-10243277IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24243286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELGLSLGET MADAGRDLVL GLGMGVVGVR REEEAAERGS RRDRDARREL EFGTTGWCGA  60
RSSPEPPAVR LTLLPGLVPR LGGLPWPPPP PPPPPSSETN RHLEASTTRG FDVNRAPSLS  120
VAGAAAAEED EEHDEAGAAA ASSSPNNSAG SFPTDFSAQG GQVAPGGGGD RGACSRASDD  180
DDGGSARKKL RLSKEQSAFL EESFKEHATL NPKQKLALAK QLNLRPRQVE VWFQNRRART  240
KLKQTEVDCE YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV  300
ASNSSAPAVA PVAPASSPSP AATGIAASSA PSEQQRPSSF AALFSSPLNR PLVAAQAQPQ  360
PRPQAPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.40242e-85callus| embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G220300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364470.0BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269110.0KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462469.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-137HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLC5X2560.0C5X256_SORBI; Uncharacterized protein
STRINGSb02g026150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-55homeobox from Arabidopsis thaliana