PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G212000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 391aa    MW: 41914.5 Da    PI: 4.6364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G212000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19134183255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Sobic.002G212000.1.p 134 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 183
                           69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.75E-32134192No hitNo description
SMARTSM003802.0E-37134197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32134192IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22134193IPR016177DNA-binding domain
PROSITE profilePS5103223.933134191IPR001471AP2/ERF domain
PRINTSPR003672.6E-11135146IPR001471AP2/ERF domain
PfamPF008476.5E-12135183IPR001471AP2/ERF domain
PRINTSPR003672.6E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCGGAILSGF IPPSGVAAAA AAAKKKQQQG RRVTADLLWP GPGKKGALPQ EEEDDFEADF  60
REFERGLSED DDVDGAGEGG DDEVQELAPP EPVRFAFAAA AKAPRPAVDG VMTPKDVQGD  120
RPTANSVKRN RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA ARAYDAEARK  180
IRGKKAKVNF PDEVPGAQKS TAKPTDSNAT KLAPPPKACA DEVFSNLNND NNDLFAMFAF  240
NDNKVPVKPA EVASFLPAVK PLVPSKRSAT NMLSDQNSNS YGSSDFGWDD DTMTSGYTFA  300
PNNAIPASYM QGGESKRMRN NYGVAMFQGN GAPSLAQVMP GFDPEMNYQP LPYVESSSSD  360
ASMDSLLPQD GASNGDIWSL DELLMAAGAY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20133194163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20134194566ATERF1
3gcc_A4e-20134194566ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.40180.0callus| embryo| leaf| ovary| panicle| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G212000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4242210.0EF424221.1 Saccharum arundinaceum EREB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309361.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QCP00.0A0A1B6QCP0_SORBI; Uncharacterized protein
STRINGSb02g025530.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-25ERF family protein