PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.002G209900.1.p | ||||||||
Common Name | Sb02g025390, SORBIDRAFT_02g025390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 19204.3 Da PI: 5.6768 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.6e-05 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F ++ L H++ H Sobic.002G209900.1.p 81 FSCTYCDKKFYSSQALGGHQNAH 103 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.12E-6 | 72 | 117 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MVQHSTLTVI QTEANSSYSS IRSSPSFGEP AALPAVLSPA AMDPKGESAR GGGGQGEGDL 60 DLNLSLQPTL LAPEPEPLGY FSCTYCDKKF YSSQALGGHQ NAHKFERSVA KRARELAAAR 120 RAGEGGERAS AAEEEPRMGK EMGIARSVSA PSSSSSHQIR ASPEASRNNL TDDIDIDLSL 180 KL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.002G209900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462424.1 | 1e-130 | zinc finger protein 2 | ||||
TrEMBL | C5XDJ8 | 1e-129 | C5XDJ8_SORBI; Uncharacterized protein | ||||
STRING | Sb02g025390.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57520.1 | 4e-12 | zinc finger protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.002G209900.1.p |
Entrez Gene | 8060292 |