PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G209800.1.p | ||||||||
Common Name | Sb02g025380, SORBIDRAFT_02g025380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 16716.8 Da PI: 8.7143 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00043 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C++ F ++ L H++ H Sobic.002G209800.1.p 24 FICMYCDRKFFSSQALGGHQNAH 46 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.9E-8 | 14 | 69 | No hit | No description |
PROSITE profile | PS50157 | 10.616 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEQELNLELT LFHPSVSPEP PGYFICMYCD RKFFSSQALG GHQNAHKYER SLAKRRREIA 60 AALRAHGAAA TATGARDAAA MGLGSRDVPA RPQGTGTGVV VVVDEDKSAT RMDKEKAAAA 120 AAAAAAAPAP APPSNKRRSP DSGYGVERAE ELDLSLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G209800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967974 | 1e-116 | EU967974.1 Zea mays clone 312184 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462423.1 | 1e-111 | uncharacterized protein LOC8056008 | ||||
TrEMBL | C5XDJ7 | 1e-110 | C5XDJ7_SORBI; Uncharacterized protein | ||||
STRING | Sb02g025380.1 | 1e-111 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 4e-15 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G209800.1.p |
Entrez Gene | 8056008 |