PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G209300.1.p | ||||||||
Common Name | Sb02g025350, SORBIDRAFT_02g025350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 39857.4 Da PI: 7.1615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd l+ ++ ++G g +W ++++g++R++k+c++rw++yl Sobic.002G209300.1.p 14 KGPWAPEEDAVLKAYIDEHGAGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.3e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd l+ + G++ W+tIa+ ++ gRt++++k++w++ Sobic.002G209300.1.p 69 GGFTEEEDRLICSLYISIGSR-WATIAAQLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.935 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.39E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.44E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.301 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRAPCCNKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN 60 YLRPNIRHGG FTEEEDRLIC SLYISIGSRW ATIAAQLPGR TDNDVKNHWN TKLKRRLLGG 120 GRRPRAEARL QLLTNPTTWQ HHNSFASSAL ERMKVSMRLH RRHQDQARLD NPAAAAAAFT 180 LYNYGSSLGA PLWPSLSSSS SPSPAASESS EMLPRQPPGA GATSTGYSGG LWTHMPGSFG 240 YTGAGVQENI DGTCTPPLST STGETMTAVG VESSSSTPTA SSASATFGSS MDDEIDMLLR 300 QIQCFGENNG HHIGDEVVTV DGIDHCFRAI MDHHEMANGN GSVGSWSSCC STPGVDSVFD 360 DYVQGYNQC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G209300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063260 | 0.0 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462421.1 | 0.0 | transcription factor MYB36 | ||||
Swissprot | Q9FKL2 | 7e-73 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | C5XD13 | 0.0 | C5XD13_SORBI; Uncharacterized protein | ||||
STRING | Sb02g025350.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13265 | 26 | 32 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-67 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G209300.1.p |
Entrez Gene | 8056007 |
Publications ? help Back to Top | |||
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