PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G202700.1.p
Common NameSb02g024760, SORBIDRAFT_02g024760
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 328aa    MW: 34720.6 Da    PI: 6.8776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G202700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-29166225159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  Sobic.002G202700.1.p 166 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 225
                           58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.129161227IPR003657WRKY domain
SuperFamilySSF1182901.96E-25164227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-28164227IPR003657WRKY domain
SMARTSM007745.0E-35166226IPR003657WRKY domain
PfamPF031061.1E-24167225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLLMDSARRA GCSPSPVCLD LSVGLSPSSP GSSGPETTAD TDDRLDRPAA GCRVASSLSD  60
EQAKTLEAKL TQVSEENRRL TEMIAYLYAS QVARQSSSSP DTTSRKRSRD SLEPPSNSSD  120
GNANAKAEPG DHAAVESALS DEGTCRRIKV TRVCTRIDPA DATLTVKDGY QWRKYGQKVT  180
RDNPSPRAYF RCAYAPSCPV KKKVQRSAED SSLLVATYEG EHNHPSPTRA GELPSSASAT  240
ASGPVPCSIS INSSGPTITL DLTKNGGGGG VRVLDAAEAP DLKKLCQEIA SPDFRTALVE  300
QMARSLTSDS KFTHALAAAI LQQLPEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201662271474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.159230.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G202700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353041e-136BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds.
GenBankBT0684931e-136BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds.
GenBankEU5187721e-136EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds.
GenBankKJ7268101e-136KJ726810.1 Zea mays clone pUT3166 WRKY transcription factor (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462384.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK51e-139WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLC5XCU50.0C5XCU5_SORBI; Uncharacterized protein
STRINGSb02g024760.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.14e-55WRKY DNA-binding protein 18