PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G199200.1.p
Common NameSb02g024530, SORBIDRAFT_02g024530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 322aa    MW: 35179.2 Da    PI: 5.0946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G199200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1431.6e-44151511128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrF+Ptdeel+++yL++kv++  ++   +++evd+yk+ePwdL p++  ++   + yfF++r+ k ++g r+nrat++gyWk+tg
  Sobic.002G199200.1.p  15 LPPGFRFRPTDEELLTHYLAPKVADAGFDP-AALREVDLYKAEPWDLlPAEGGEDGGGVgYFFCRRSVKFPSGLRTNRATRAGYWKSTG 102
                           79*************************999.78**************4444433333446***************************** PP

                   NAM  88 kdkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v++++++          g++ktLvfy+grap+g+kt+W+mheyrl
  Sobic.002G199200.1.p 103 KDRVVVASRSSSsrgdddcpLGVRKTLVFYRGRAPTGHKTSWIMHEYRL 151
                           ******98444455666777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-5214180IPR003441NAC domain
PROSITE profilePS5100550.76215180IPR003441NAC domain
PfamPF023652.6E-2716151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEGDGDGRRA APGPLPPGFR FRPTDEELLT HYLAPKVADA GFDPAALREV DLYKAEPWDL  60
LPAEGGEDGG GVGYFFCRRS VKFPSGLRTN RATRAGYWKS TGKDRVVVAS RSSSSRGDDD  120
CPLGVRKTLV FYRGRAPTGH KTSWIMHEYR LLHGHGYTSP VVHATAGAQS EWVICRMFMK  180
KAPGETSQPE QEEAVLHPPL EDHMQPPPVD DCGGETPAPA AAASDSDHQH VNCFSNIALA  240
MVPGDTNFHG IESMLQLNRH GHEELWMNYP ESTYPPVAAA STSGSAEAAL RLRDELVADS  300
SFDLLPQLLD YDEAFPFLQD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-381518517170NO APICAL MERISTEM PROTEIN
1ut4_B2e-381518517170NO APICAL MERISTEM PROTEIN
1ut7_A2e-381518517170NO APICAL MERISTEM PROTEIN
1ut7_B2e-381518517170NO APICAL MERISTEM PROTEIN
3swm_A3e-381518520173NAC domain-containing protein 19
3swm_B3e-381518520173NAC domain-containing protein 19
3swm_C3e-381518520173NAC domain-containing protein 19
3swm_D3e-381518520173NAC domain-containing protein 19
3swp_A3e-381518520173NAC domain-containing protein 19
3swp_B3e-381518520173NAC domain-containing protein 19
3swp_C3e-381518520173NAC domain-containing protein 19
3swp_D3e-381518520173NAC domain-containing protein 19
4dul_A2e-381518517170NAC domain-containing protein 19
4dul_B2e-381518517170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G199200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462370.10.0NAC domain-containing protein 92
TrEMBLC5XC890.0C5XC89_SORBI; Uncharacterized protein
STRINGSb02g024530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-46Arabidopsis NAC domain containing protein 87