PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G197800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 164aa    MW: 17578.7 Da    PI: 7.3703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G197800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-064971123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++C+k F++   L  H+++H
  Sobic.002G197800.1.p 49 YTCGYCKKEFRSAQGLGGHMNVH 71
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-64875No hitNo description
PfamPF139129.6E-64972IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8454976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MERVDDRQIK LQQQQQPPCS DNNFSLAAAA SSFSWPPPQV RSSPLSSSYT CGYCKKEFRS  60
AQGLGGHMNV HRLDRAKLIH QQTFLDLGLS LSSLLARGGA AGGDIDGGGL PVPLEKQLGD  120
RFSLASSAAT NDYYSEGKNL ELRMGACSHG GDGCLDLQLR LCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G197800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1204961e-137AC120496.2 Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence.
GenBankAY9573981e-137AY957398.1 Sorghum bicolor RAMOSA1 C2H2 zinc-finger transcription factor (ramosa1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309209.11e-59probable transcriptional regulator RABBIT EARS
TrEMBLA0A1B6QCG81e-115A0A1B6QCG8_SORBI; Uncharacterized protein
STRINGSb02g024410.14e-67(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2224367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-14C2H2 family protein