PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G197700.1.p
Common Nameramosa1
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 185aa    MW: 19532.7 Da    PI: 7.502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G197700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-065173123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++C+k F++   L  H+++H
  Sobic.002G197700.1.p 51 YTCGYCKKEFRSAQGLGGHMNVH 73
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-64977No hitNo description
PfamPF139121.1E-55174IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8455178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDAAGQIKLQ QQHQPPCSDN NFSLLAAAAD SSSWPPPQVR SPPSSSSSSS YTCGYCKKEF  60
RSAQGLGGHM NVHRLDRARL IHQQYMSSSS HRTAPPPSNP NPSCAVLDLG LSLSSLLARG  120
GGDGGGLPVP LEKQLGDRFS SASSAAATND YYSEVKNLEL RMGACSHGGD GTEERLDLQL  180
RLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G197700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1204960.0AC120496.2 Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence.
GenBankAY9573980.0AY957398.1 Sorghum bicolor RAMOSA1 C2H2 zinc-finger transcription factor (ramosa1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309209.11e-132probable transcriptional regulator RABBIT EARS
TrEMBLQ3ZDP51e-131Q3ZDP5_SORBI; RAMOSA1 C2H2 zinc-finger transcription factor
STRINGSb02g024400.11e-102(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2224367
Representative plantOGRP1958622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-13C2H2 family protein
Publications ? help Back to Top
  1. Vollbrecht E,Springer PS,Goh L,Buckler ES,Martienssen R
    Architecture of floral branch systems in maize and related grasses.
    Nature, 2005. 436(7054): p. 1119-26
    [PMID:16041362]