PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G196000.1.p | ||||||||
Common Name | Sb02g024250, SORBIDRAFT_02g024250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 31859.8 Da PI: 4.7392 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++lv G +W+++++ g+ R++k+c++rw +yl Sobic.002G196000.1.p 14 RGPWTVEEDQKLVTFLLTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.8e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + eE+ +d+++qlG++ W++Ia+ ++ gRt++++k++w+++ Sobic.002G196000.1.p 70 LSSEEERTVIDLHEQLGNR-WSKIASQLP-GRTDNEIKNHWNTH 111 589****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-19 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.384 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.428 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-11 | 71 | 112 | No hit | No description |
Pfam | PF00249 | 2.5E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRQPCCAKV GLKRGPWTVE EDQKLVTFLL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDVKRGLL SSEEERTVID LHEQLGNRWS KIASQLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPVTHKPLH QPASPPPPPP LTRQEQEEKD TGGSPEEEEE EEIVTAITAG HDASCTDEVP 180 MALLLDDMDI VLPGDDVVGA QAAACVGTVY SPESSSSSSS YSASAAALSG GSSSSSVDGE 240 CPDWLPMMDW PEPIWQLEDV VTARTPWEFE DPFVYQRIAL FDHQETF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G196000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF474131 | 0.0 | AF474131.1 Sorghum bicolor typical P-type R2R3 Myb protein (Myb54) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460189.1 | 0.0 | protein ODORANT1 | ||||
TrEMBL | C5XC55 | 0.0 | C5XC55_SORBI; Uncharacterized protein | ||||
STRING | Sb02g024250.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 1e-83 | myb domain protein 43 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G196000.1.p |
Entrez Gene | 8055799 |