PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G192600.1.p | ||||||||
Common Name | Sb02g023960, SORBIDRAFT_02g023960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 373aa MW: 40817.6 Da PI: 6.2619 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.6e-52 | 20 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhP+d+e+v+ yL +kv+++ ++ ++i+evd++k+ePwdLp+++k +ekewyfF ++d+ky++g r+nratk gyWkatg+d Sobic.002G192600.1.p 20 LPPGFRFHPSDNEIVSIYLMNKVHNRGFTS-TIIAEVDLNKTEPWDLPQEAKIGEKEWYFFYQKDRKYPSGLRANRATKGGYWKATGRD 107 79*************************999.89***************99999************************************ PP NAM 90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 kev ++++ + +g+kktLvfy+g+apkg kt+Wvmheyrle Sobic.002G192600.1.p 108 KEVDNTTQGVvllIGMKKTLVFYRGKAPKGDKTNWVMHEYRLE 150 ***99755446779***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-58 | 11 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.19 | 20 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 21 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MEEQQQQEMN TASIGGGLTL PPGFRFHPSD NEIVSIYLMN KVHNRGFTST IIAEVDLNKT 60 EPWDLPQEAK IGEKEWYFFY QKDRKYPSGL RANRATKGGY WKATGRDKEV DNTTQGVVLL 120 IGMKKTLVFY RGKAPKGDKT NWVMHEYRLE GSSRLPDPAS ASSSASNVLA MKASASKDEW 180 VVCRVFDKTT SIKKMTTPVY KVAMASAEIG QNQNNTPAIP IPMPLQQPLP VPMPMESPIL 240 RDFATCPVAP YFPNTGADMP PMMSSMEGID GTSSLQINDT LFGNSIATPP QMDLYHHMGM 300 GVAAVHMGIG VAGQMDMAAT GTDGFDLATP MPPSMASQKD EQANVAKMWS MMSVAGPGSV 360 NPSTERDDIW KY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 18 | 194 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G192600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460177.2 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A1W0W530 | 0.0 | A0A1W0W530_SORBI; Uncharacterized protein | ||||
STRING | Sb02g023960.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 6e-70 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G192600.1.p |
Entrez Gene | 8055787 |