PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G182701.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 272aa MW: 28674.3 Da PI: 6.1107

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G182701.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.4	1.1e-14	2	60	43	101
DUF260 43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lk+lk++ ++ ++am++++y+++ara dPv G+vg+i++lq+q++ +++el+ +++++ Sobic.002G182701.1.p 2 LKTLKRVGPKYGPEAMRTIIYQSDARAADPVGGCVGIINQLQRQIRDADVELQFVRQQI 60 688999999999*******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.675	1	60	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-12	2	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MLKTLKRVGP KYGPEAMRTI IYQSDARAAD PVGGCVGIIN QLQRQIRDAD VELQFVRQQI 60 AICRQHQQAA AGVLSGPAAA MILPHADASS PVVGVGLVAA GQQDHKVAVD AMIYTAGRGQ 120 QPSIPAGDDP SSHQQQLYDY FCYNNGTAGD EATSDDGGMQ QYGGLADVVG GSVAKAGSRA 180 VALGEQLGQH CQIQIQALPF VDAFNEKKPQ ILPATIQHHG RAAAGDLLHP GKKKLVTPKV 240 LVEHDDVDEH MDEQQATAGA PCHLELGFSS F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G182701.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309197.1	0.0	uncharacterized protein LOC8055814
TrEMBL	A0A1W0W4Q3	0.0	A0A1W0W4Q3_SORBI; Uncharacterized protein
STRING	Sb02g023070.1	1e-163	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-13	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Sobic.002G182701.1.p