PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G174200.1.p
Common NameSb02g022280, SORBIDRAFT_02g022280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 311aa    MW: 32898.5 Da    PI: 5.987
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.59.7e-27107166258
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                           dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp+ ++++Y g+H++
  Sobic.002G174200.1.p 107 DDGHSWRKYGQKDILGAKHPRGYYRCTHRhsqGCAATKQVQRTDEDPTSFDVVYLGDHTC 166
                           8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2791167IPR003657WRKY domain
PROSITE profilePS5081122.01101164IPR003657WRKY domain
SuperFamilySSF1182901.44E-24104166IPR003657WRKY domain
SMARTSM007743.1E-38106168IPR003657WRKY domain
PfamPF031066.3E-26107166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAASVVDGNG GSGGLVVTEL GHVKELARQL EAQLGGSSPD LCKHLASQIS SIAERSISLL  60
ITTSSGLAGA RKRSAVPFVK GTKKRKTMDK KRHEVRVSSA AGDHPADDGH SWRKYGQKDI  120
LGAKHPRGYY RCTHRHSQGC AATKQVQRTD EDPTSFDVVY LGDHTCVQSQ WAAAAGQAAA  180
DALAPEYNGK PGTNLTVKTE GPTVEPAEQQ VQGWDAPTPF CFSSTPATAT ASWCLVPELS  240
PPFSAPSTSN NWGVSPATSD SNHVVSFPPF EVAGDDVQFG RFEEVMSAID RADGDGFLDD  300
LDIDVSSFLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-24107166968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17085RKRSAVPFVKGTKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713091e-150EU971309.1 Zea mays clone 361886 WRKY74 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460068.20.0probable WRKY transcription factor 17
TrEMBLC5X9X70.0C5X9X7_SORBI; Uncharacterized protein
STRINGSb02g022280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-29WRKY DNA-binding protein 46