PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G161800.1.p
Common NameSb02g020700, SORBIDRAFT_02g020700
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 306aa    MW: 33317.7 Da    PI: 6.3188
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G161800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.9e-344599155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sobic.002G161800.1.p 45 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 99
                          58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.61342102IPR017930Myb domain
SuperFamilySSF466894.48E-184499IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-3244100IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-2646100IPR006447Myb domain, plants
PfamPF002494.2E-94798IPR001005SANT/Myb domain
PfamPF143791.4E-23132177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYSPKPESSF APNPNSGTHQ QQMELPGANM GPSNGANNNT NMAARQRLRW TNELHERFVE  60
AVTQLGGPDR ATPKGVLRIM GVQGLTIYHV KSHLQKYRLA KYIPDASTDG NKADNKDPGD  120
LLAGLEGSSG LPISEALKLQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQK IIEEQQRLTG  180
VKSETPAGGA SVTVSSDQFP DSERTEPSTP APTSESPTQV GASNRDPGDR TEGTKSTCHE  240
PLTPDSNCQN GSPVASPNHE RAAKRQRGSG TEFLDSESEF SLPRHIFESS SGSEFQQYSM  300
SYSGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.146190.0callus| leaf| panicle| pollen| shoot
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G161800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332050.0BT033205.1 Zea mays full-length cDNA clone ZM_BFb0066I21 mRNA, complete cds.
GenBankBT0398990.0BT039899.1 Zea mays full-length cDNA clone ZM_BFc0050C09 mRNA, complete cds.
GenBankBT0411540.0BT041154.1 Zea mays full-length cDNA clone ZM_BFc0181P18 mRNA, complete cds.
GenBankBT0858910.0BT085891.1 Zea mays full-length cDNA clone ZM_BFc0076P02 mRNA, complete cds.
GenBankBT0863350.0BT086335.1 Zea mays full-length cDNA clone ZM_BFc0154D10 mRNA, complete cds.
GenBankEU9764460.0EU976446.1 Zea mays clone 894637 MYB-CC type transfactor mRNA, complete cds.
GenBankJX4699000.0JX469900.1 Zea mays subsp. mays clone UT3140 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460002.10.0myb family transcription factor PHL7
SwissprotQ9SJW04e-98PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLC5X8Z30.0C5X8Z3_SORBI; Uncharacterized protein
STRINGSb02g020700.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-75G2-like family protein