PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G161700.2.p
Common NameSb02g020690, SORBIDRAFT_02g020690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 186aa    MW: 20189 Da    PI: 8.7068
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G161700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like301.2e-091203655
               G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                          m+vkgLtl h+kSHLQkYRl
  Sobic.002G161700.2.p  1 MGVKGLTLFHLKSHLQKYRL 20
                          99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-8121IPR009057Homeodomain-like
PfamPF143791.9E-2061107IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGVKGLTLFH LKSHLQKYRL GKQSGKEGSE QSKDASYLLD AQSGMSVSPR VPAQEMKESQ  60
EVKEALRAQM EVQRRLHEQV EVQKRVQIRM EALQKYIDSI LGSACKMVTE QFASSGFSIS  120
DPDLPEISPG GIMCGPTDTL SSSVFNQLSV SSIDSHSPGG KPSPSGMEGP PLLLQKSPEL  180
KRRSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G161700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373470.0BT037347.1 Zea mays full-length cDNA clone ZM_BFb0165E16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460001.11e-131protein PHR1-LIKE 3
SwissprotQ8LAJ72e-40PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLC5X8Z21e-130C5X8Z2_SORBI; Uncharacterized protein
STRINGSb02g020690.11e-130(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-42G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]