PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G161700.1.p | ||||||||
Common Name | Sb02g020690, SORBIDRAFT_02g020690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 186aa MW: 20189 Da PI: 8.7068 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 30 | 1.2e-09 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkgLtl h+kSHLQkYRl Sobic.002G161700.1.p 1 MGVKGLTLFHLKSHLQKYRL 20 99*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-8 | 1 | 21 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.9E-20 | 61 | 107 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGVKGLTLFH LKSHLQKYRL GKQSGKEGSE QSKDASYLLD AQSGMSVSPR VPAQEMKESQ 60 EVKEALRAQM EVQRRLHEQV EVQKRVQIRM EALQKYIDSI LGSACKMVTE QFASSGFSIS 120 DPDLPEISPG GIMCGPTDTL SSSVFNQLSV SSIDSHSPGG KPSPSGMEGP PLLLQKSPEL 180 KRRSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G161700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037347 | 0.0 | BT037347.1 Zea mays full-length cDNA clone ZM_BFb0165E16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460001.1 | 1e-131 | protein PHR1-LIKE 3 | ||||
Swissprot | Q8LAJ7 | 2e-40 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | C5X8Z2 | 1e-130 | C5X8Z2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g020690.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 8e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G161700.1.p |
Entrez Gene | 8064667 |
Publications ? help Back to Top | |||
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