PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G153900.1.p
Common NameSb02g019110, SORBIDRAFT_02g019110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 316aa    MW: 35010.8 Da    PI: 8.9029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G153900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025164183120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           + Cp C k+Fsr  nL+ H+
  Sobic.002G153900.1.p 164 FACPVCCKTFSRYNNLQMHM 183
                           78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-5155186No hitNo description
PROSITE profilePS5015710.284164191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-7164183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808268304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAKSSYTFLR PHIAGPLLFQ RSLVVSPPPV PPPPVTKEAL PLLSLLPSSS HDYNQHGDNN  60
DKADQPRNKN NEEEAMEDTE TIKLRIGPPS PNCDSPLDLA TVVAGAGDSK AAEEGEEELG  120
SQAGGTATGD DGCSEYFTIG EKKLTNGKYW IPTAAQIMFG PMLFACPVCC KTFSRYNNLQ  180
MHMWGHGSQY RRGPDSLRGT QPAAMLRLPC FCCAPGCRNH VDHPRARPLK DFRTLQTHYR  240
RRHCARPFLC RRCGKALAVR GDWRTHEKNC GRRWRCACGS DFKHKRSLKD HVRAFGRGHV  300
EDHPAVIVGQ TKPTV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G153900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574671e-143AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBankAK3594101e-143AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462102.10.0zinc finger protein WIP2
SwissprotQ8W0303e-96ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLC5X8700.0C5X870_SORBI; Uncharacterized protein
STRINGSb02g019110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-97C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]