PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G141450.1.p | ||||||||
Common Name | Sb02g013020, SORBIDRAFT_02g013020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 81aa MW: 8194.28 Da PI: 10.5573 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 36.4 | 1.8e-11 | 52 | 80 | 2 | 30 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaa 30 g+kdrhsk++T++g RdRRv+ls+ +a+ Sobic.002G141450.1.p 52 SGGKDRHSKVYTAKGIRDRRVCLSVATAI 80 689***********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-10 | 53 | 80 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 14.172 | 54 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MEVEEEAVGC ASATGGGAGG KRAVAVTVSP AAGAPWAQQH PASRIYRVSR ASGGKDRHSK 60 VYTAKGIRDR RVCLSVATAI * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G141450.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066930 | 8e-56 | BT066930.1 Zea mays full-length cDNA clone ZM_BFb0110J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396804.1 | 4e-20 | transcription factor PCF6 | ||||
Swissprot | Q9C758 | 3e-15 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | A0A1W0W3T1 | 6e-49 | A0A1W0W3T1_SORBI; Uncharacterized protein | ||||
STRING | Sb02g013020.1 | 5e-50 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 3e-16 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G141450.1.p |
Entrez Gene | 8063858 |
Publications ? help Back to Top | |||
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