PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G139800.1.p | ||||||||
Common Name | Sb02g012860, SORBIDRAFT_02g012860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 34646.4 Da PI: 7.2883 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl Sobic.002G139800.1.p 14 KGPWSPEEDRKLKEYIHKNGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.4 | 1.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ Sobic.002G139800.1.p 69 GDFSDDEDRIICNLFTTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.688 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.56E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.339 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.37E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRAPCCDKL SVKKGPWSPE EDRKLKEYIH KNGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDDEDRIIC NLFTTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMHS 120 LQPYTTHNHH STTVPSAAAA VASPEAAPIM SLQHLSSHDY SHIYSSDGSY SSNNSMTSLL 180 SAAAGSLGLL LNGEQQATTC LDSGGGHGIY LQEPYATTIS SNVHGHGLSA ETFIFGGFQS 240 QEDHHHHKVL LLSGSGAANN QLDEQYNFAA SCCYDDEKAP PLLSLTGGAD GAGGTTSSFF 300 YDSTYNEHTA TATTTRAGAQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G139800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310603.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A1B6QB77 | 0.0 | A0A1B6QB77_SORBI; Uncharacterized protein | ||||
STRING | Sb02g012860.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 2e-73 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G139800.1.p |
Entrez Gene | 8062578 |