PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G136200.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

BES1

Protein Properties

Length: 597aa MW: 67005.9 Da PI: 4.7543

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G136200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	119.5	4.6e-37	61	134	3	76
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 r++ +E+E++k RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ +s+ Sobic.002G136200.2.p 61 PNRRRAREEKERTKMRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSSSSS 134 5799999*************************************************************877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-33	62	136	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	4.7E-191	153	592	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	5.0E-208	156	590	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.2E-116	162	579	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	193	207	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	214	232	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	236	257	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	240	248	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	1.3E-8	319	328	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.4E-77	329	351	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	402	421	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	436	452	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	453	464	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.4E-77	471	494	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-8	474	484	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.4E-77	511	533	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.3E-8	562	576	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.3E-8	577	591	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0009570	Cellular Component	chloroplast stroma
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MQQAGPADDD EDEEMGVKEE EEDGDEEEED DDGYYMDPRS PAAATVVSTP GGGGGRAGGT 60 PNRRRAREEK ERTKMRERQR RAITGRILAG LRQHGNYSLR ARADINEVIA ALAREAGWVV 120 LPDGTTFPSS SSSSAAVAAQ VPDVAPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD 180 ELVGQLRVLK AAGVDGVMVD CWWGNVEAHR PQEYNWTGYR RLFQMIRELK LKLQVVMSFH 240 ECGGNVGDDI SIPLPHWVIE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTAVEV 300 YFDFMRSFRV EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL 360 QKSLRKAAEA RGHTIWARGP DNAGHYNSEP NLTGFFCDGG DYDSYYGRFF LSWYSQTLVD 420 HADRVLMLAR LAFEGSNIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YAPIAAVLKK 480 YDAALNFTCV ELRTMDQHEV YPEAFADPEG LVWQVLNAAW DAGIQVASEN ALPCYDRDGF 540 NKILENAKPL NDPDGRHLFG FTYLRLSNVL FERPNFFEFE RFVKRMHGEA VLDLQV*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MQQAGPADDD EDEEMGVKEE EEDGDEEEED DDGYYMDPRS PAAATVVSTP GGGGGRAGGT  60
PNRRRAREEK ERTKMRERQR RAITGRILAG LRQHGNYSLR ARADINEVIA ALAREAGWVV  120
LPDGTTFPSS SSSSAAVAAQ VPDVAPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD  180
ELVGQLRVLK AAGVDGVMVD CWWGNVEAHR PQEYNWTGYR RLFQMIRELK LKLQVVMSFH  240
ECGGNVGDDI SIPLPHWVIE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTAVEV  300
YFDFMRSFRV EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL  360
QKSLRKAAEA RGHTIWARGP DNAGHYNSEP NLTGFFCDGG DYDSYYGRFF LSWYSQTLVD  420
HADRVLMLAR LAFEGSNIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YAPIAAVLKK  480
YDAALNFTCV ELRTMDQHEV YPEAFADPEG LVWQVLNAAW DAGIQVASEN ALPCYDRDGF  540
NKILENAKPL NDPDGRHLFG FTYLRLSNVL FERPNFFEFE RFVKRMHGEA VLDLQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-163	158	589	11	444	BETA-AMYLASE
1bya_A	1e-163	158	589	11	444	BETA-AMYLASE
1byb_A	1e-163	158	589	11	444	BETA-AMYLASE
1byc_A	1e-163	158	589	11	444	BETA-AMYLASE
1byd_A	1e-163	158	589	11	444	BETA-AMYLASE
1q6c_A	1e-163	158	589	11	444	beta-amylase
1wdp_A	1e-163	158	589	11	444	Beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.16154	0.0	ovary

Functional Description ? help Back to Top
Source	Description
UniProt	Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269\|PubMed:18390594, ECO:0000269\|PubMed:19664588}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G136200.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly by cold stress. {ECO:0000269\|PubMed:16297066}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956905	0.0	EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459849.2	0.0	beta-amylase 2, chloroplastic
Swissprot	O65258	0.0	BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBL	A0A1W0W3Q2	0.0	A0A1W0W3Q2_SORBI; Beta-amylase
STRING	ORUFI09G21750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63
Representative plant	OGRP4345	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Sobic.002G136200.2.p

Publications ? help Back to Top
Smith AM,Zeeman SC,Smith SM Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] Lundmark M,Cavaco AM,Trevanion S,Hurry V Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] Li J, et al. Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] Monroe JD, et al. Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]