PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G128400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 276aa MW: 29095.9 Da PI: 6.1562 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.3 | 5e-26 | 74 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqKe+ g++fprsYY+C + gCp+kk+v++++ dp+ +e+tY + H+++ Sobic.002G128400.2.p 74 HDSYTWRKYGQKEILGARFPRSYYKCGRRpGCPAKKHVQQCDADPSKLEVTYLEAHTCD 132 7**************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-26 | 72 | 134 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-31 | 73 | 133 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-23 | 73 | 134 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.597 | 75 | 134 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-24 | 75 | 132 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MAPVQSALAA TWTPSCRTSL IHCVKRSLLC GSAPVGSQRP PASPPTGAQP VPAAGDQQRQ 60 GELLNGPVLQ NGVHDSYTWR KYGQKEILGA RFPRSYYKCG RRPGCPAKKH VQQCDADPSK 120 LEVTYLEAHT CDDPPPSSSH AVPDPTAGSD ALLVPPVPTV PFPSAQCYGG GRPSPPPLPP 180 YQVPYAATTL GSNVLTLTAT GVLLPSASYD PVPDVTDCTP SLEQEQDHDL LHIPSPACSQ 240 SELLPMEAAK LSPHAHGLPL SLEHTLDCDF AVPEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-15 | 67 | 137 | 12 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-15 | 67 | 137 | 12 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G128400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ428550 | 0.0 | DQ428550.1 Sorghum bicolor voucher BTx623 locus PRC1162 genomic sequence. | |||
GenBank | DQ428551 | 0.0 | DQ428551.1 Sorghum bicolor voucher NSL50875 locus PRC1162 genomic sequence. | |||
GenBank | DQ428552 | 0.0 | DQ428552.1 Sorghum bicolor voucher NSL51030 locus PRC1162 genomic sequence. | |||
GenBank | DQ428561 | 0.0 | DQ428561.1 Sorghum bicolor voucher NSL92371 locus PRC1162 genomic sequence. | |||
GenBank | DQ428562 | 0.0 | DQ428562.1 Sorghum bicolor voucher PI152702 locus PRC1162 genomic sequence. | |||
GenBank | DQ428564 | 0.0 | DQ428564.1 Sorghum bicolor voucher PI267408 locus PRC1162 genomic sequence. | |||
GenBank | DQ428566 | 0.0 | DQ428566.1 Sorghum bicolor voucher PI585454 locus PRC1162 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459807.1 | 1e-149 | WRKY transcription factor 6 | ||||
TrEMBL | A0A1W0W3R3 | 0.0 | A0A1W0W3R3_SORBI; Uncharacterized protein | ||||
STRING | Sb02g011050.1 | 1e-148 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14186 | 21 | 25 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 4e-21 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G128400.2.p |