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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.002G114400.1.p |
| Common Name | Sb02g009750, Sb02g009782, SORBIDRAFT_02g009750, SORBIDRAFT_02g009782 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 350aa MW: 38434.6 Da PI: 10.3199 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G114400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 332.3 | 1.3e-101 | 3 | 349 | 2 | 301 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.............rernlalsekkaavaerd.................. 57
dddgs rn+g+y+ k nlglqlmss + +rd+k +++ + + ++++++r
Sobic.002G114400.1.p 3 DDDGSLGiRNWGFYDTV---KGNLGLQLMSSAPpDRDTKSllpngaflqhhghHNAPH-QLHMQHSLHSRGpaggrasggmptesqpih 87
45677779******987...************99******777666666533211111.2233334455559***************** PP
GAGA_bind 58 maflqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelre 128
m+f +++++l++ +++ +r++++l+ ++ +++p+g++++s+++++ +++q + e+ql++++ +
Sobic.002G114400.1.p 88 MDFSRNEAWLHQPHHHQRPREQRVLHSRPIGPDGHvghpgygghpahgghivHHHPTGYEMISDAQHTlQMMQPQLETQLQEPPPC--K 174
***************************9998776678899************9********9998765166666889999998876..4 PP
GAGA_bind 129 eeklealpieeaaeeake...kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCs 214
ee+ + ie+++ +++ kk+++ rq++++pk++k kk+kk +++ ++ +++++ +r++ +kk++++v+ng++lD +++P+PvCs
Sobic.002G114400.1.p 175 EEEAPPPLIEDHTAVSTGppvKKRQRGRQQNRQPKSPKPKKPKK-AAVPVEDGAPNGHAPRRRGPKKTVGMVINGIELDLANIPTPVCS 262
4445566666666555541112333446788999999****999.78999999*99999****************************** PP
GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmS+gafkk+LekLa+eGy+l+np++Lk++WAkHGtnkfvtir
Sobic.002G114400.1.p 263 CTGSPQQCYRWGAGGWQSACCTTSISMYPLPMSTKRRGARISGRKMSHGAFKKVLEKLAGEGYNLANPINLKTFWAKHGTNKFVTIR 349
**************************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDDDDGSLGI RNWGFYDTVK GNLGLQLMSS APPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60
MQHSLHSRGP AGGRASGGMP TESQPIHMDF SRNEAWLHQP HHHQRPREQR VLHSRPIGPD 120
GHVGHPGYGG HPAHGGHIVH HHPTGYEMIS DAQHTLQMMQ PQLETQLQEP PPCKEEEAPP 180
PLIEDHTAVS TGPPVKKRQR GRQQNRQPKS PKPKKPKKAA VPVEDGAPNG HAPRRRGPKK 240
TVGMVINGIE LDLANIPTPV CSCTGSPQQC YRWGAGGWQS ACCTTSISMY PLPMSTKRRG 300
ARISGRKMSH GAFKKVLEKL AGEGYNLANP INLKTFWAKH GTNKFVTIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
