PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G114200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 246aa MW: 26989.7 Da PI: 9.9626 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 25.4 | 3.8e-08 | 3 | 122 | 2 | 108 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaav...aerdmaflqrdkalae.rnkalverdnkllal 84 dddgs rn+g+y+ k nlglq+mss++ +rd+k n a+ ++++ + ++ m+ ++ + +a ++ + ++k+l+ Sobic.002G114200.1.p 3 DDDGSLGtRNWGFYDTV---KGNLGLQVMSSVPpDRDTKSLLPNGAFLQHHGHHnapHQLHMQQ-HSQHSVAPlVLHHQRPPEQKVLHS 87 45566667******987...************99******777766665555442114444544.344455552334445556777777 PP GAGA_bind 85 llvensla...........salpvgvqvlsgtksi 108 ++ + + +p++++++s+++++ Sobic.002G114200.1.p 88 RPIGPAGHvghpghgghivHYHPTSYGMISDAQHT 122 76666555555666666666666666666665554 PP | |||||||
2 | GAGA_bind | 243.2 | 1.8e-74 | 129 | 245 | 185 | 301 |
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273 + + +kk++++v+ng++lD +++P+ vCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRi+grKmSqgafkk+LekLa Sobic.002G114200.1.p 129 SLERGSKKTVGMVINGIELDLANIPTLVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARISGRKMSQGAFKKVLEKLA 217 557999*********************************************************************************** PP GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301 +eGy+l+np+DLk++WAkH tnkfvtir Sobic.002G114200.1.p 218 GEGYNLANPIDLKTFWAKHRTNKFVTIR 245 ***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 8.5E-120 | 1 | 245 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.5E-13 | 3 | 128 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.4E-74 | 131 | 245 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDDDDGSLGT RNWGFYDTVK GNLGLQVMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60 MQQHSQHSVA PLVLHHQRPP EQKVLHSRPI GPAGHVGHPG HGGHIVHYHP TSYGMISDAQ 120 HTLQMMQPSL ERGSKKTVGM VINGIELDLA NIPTLVCSCT GAPQQCYRWG AGGWQSACCT 180 TSISTYPLPM NTKRRGARIS GRKMSQGAFK KVLEKLAGEG YNLANPIDLK TFWAKHRTNK 240 FVTIR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G114200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054267 | 1e-139 | BT054267.1 Zea mays full-length cDNA clone ZM_BFb0206F22 mRNA, complete cds. | |||
GenBank | BT064015 | 1e-139 | BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008787890.1 | 1e-82 | protein Barley B recombinant-like | ||||
TrEMBL | A0A1B6QAK9 | 0.0 | A0A1B6QAK9_SORBI; Uncharacterized protein | ||||
STRING | Sb02g009770.1 | 1e-133 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 | Representative plant | OGRP1865 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-61 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G114200.1.p |