PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G104400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 1656aa    MW: 184104 Da    PI: 6.866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G104400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.95.7e-1515101569258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                            dD  +W K+G K++ g  f+rsYYrC  +   gC+++k ++ +++d +++ ++Y +eHnh
  Sobic.002G104400.1.p 1510 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1569
                            8999**********************9887889*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520582.04E-28495663IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.7E-29496668IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367110519539IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036728567594IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367520615639IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF525402.33E-38698938IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.3E-5703834IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.1E-10718733No hitNo description
PfamPF009313.7E-35720965IPR002182NB-ARC
PRINTSPR003641.1E-10788802No hitNo description
PRINTSPR003641.1E-10885899No hitNo description
SuperFamilySSF520585.55E-3310011216IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.3E-1210361197IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.1E-1011231139No hitNo description
SuperFamilySSF520585.55E-3312581454IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.4E-1112601465IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003676513731402IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:2.20.25.807.1E-1614981570IPR003657WRKY domain
SuperFamilySSF1182902.35E-1615031571IPR003657WRKY domain
PROSITE profilePS5081117.3515041572IPR003657WRKY domain
SMARTSM007746.2E-1315091571IPR003657WRKY domain
PfamPF031069.9E-1415101569IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1656 aa     Download sequence    Send to blast
MDATASESDP SSPRSRQLLP PIDATMASDP SPPPHRRQLR GPRPPRLDVR MESHKIKKPT  60
AVTPQPYKRS HLHLRWSRVK EIHCEPTDFK ALVQRHTGPV ATAPPDCTEM QYAGRSVVWS  120
PPVRPSRIAA VVVSASARLA ATVRAVGADS LVAADADSSL AAVLSLPRRP PGILSPAALP  180
PAACSGQFSA TPFDPSCLPW LKDKDKELSL QSPFFLPAGV EELQCLFTLN PRTRLLPAPG  240
MPPCPATVVS TAAGLSENNV LEIEIESGNG EGVPAGPVGD AERSPKAEPA GDLQVGACLA  300
SIKRLFQQLV HVRTIISSFS GKLPSDAWFN HVKHLTSDAE ESLEHLHYQM MLAKLGVGVG  360
THLEKVMPKV SGTRSKTTAI SFMHLLASQE LVILPVTDKL EGLRHGSPGL SGVVLGNYSD  420
MLSLSSSVIR CILLCRGILG IINMVNMEGK DKSLELPVFA FDDLTYAGLN KGIGMNAHSV  480
PARMTDPIYL LPMFTRSLLC LDLSSYSGLT QLPPSIGNLS NLAALNLSHC YSLQTLTVSI  540
GSLKNLQTLV LSCCHELRNL PVSLCELSKL RLLDLAGCSS LENLPASLVN LGNLENLNLS  600
YCKELKELPQ PFGNLQELKY LNLSGSHRVD LDVECLCTLA NLKSLTLSPL TNIQGFPDSF  660
KDLANRLDSL RWWKKNQIHP QCGPKAASLQ SYRCYEQSII DMLLSDEADN SSDQIVTSAC  720
IVGESGMGKT ELVHQIYNNR MIFDTFDLRI WLNMCDKKRL LGKIVELTTC ASCSDASISV  780
LEEIVIEELT SKRLLLVLDD SEIKSQYFWG YIRKLLNVCA KGSAVIVTTK SKEVANQIGA  840
MQTFYLSPLS KEECFMIFKE HVLEDLAMNN YCQLESIGWK FVEKCGGNPM CIKVLSGLLC  900
HSEIGLSEID MIVDGILPAL RLCYDLLPAH LQQCFKFCSL FPKDYIFVKH HIIRLWIAEG  960
FVFCEEGTKP EDTALHYFDQ LFCRSFFQRS PFHSDHKDSF VMHELFHDLA HSVSKNECFR  1020
CEEPFCSFAE NVSHLSLVLS DFKTAALSNE VRNLQSFLVV RRCLPVVRIF TLDDIFVKHR  1080
FLRALNLSYT DILELPISIG NMKHLRLLAL NNTKIKSLPI EIGQVNSLQT LELKDCCHLI  1140
DLPGSTSSLA KLRHLDVQKE WGNVNVGMPH GIGYLTDLQT LTTFNIGNDL LHCSISELKN  1200
LNGLSGHVHV TGLENIKTAN DAREANMMGK HLLEALTLEW SYQEEGMDDD MGKEIANEIL  1260
QHLQPNSNIM ELVIQNYAGN LFPVWMQDNY LCKLISVTLD NCHGCSELPY LGDLPSLKSL  1320
FIQRINGVER FGIETSSLAT EEKHPTGFPS LEVLNICEMY DLQFWVSMRE GDFPRLFRLS  1380
ISRCPKLTNL PRLISLVHVS FYYGVELPTF SELPSLESLK IEGFQKIRSI NFPHHLTTLK  1440
KLEIIDCKEL LSVYAHSLSV SDLKVVRCLK LDLVGSSTED HIGQKVVNGR NSLTRRPMVL  1500
KTLTYTNVLD DDSKWEKFGE KNIFGYIFAR SYYRCIWRNL TGCSATKILQ PDNNDANTLF  1560
VMYISEHNHG FSNEPHLELQ SQLGTGRKRK EYDVSSDENT SRKQLHDSSV SAASSVPRPA  1620
TGEATPSSAE ELKAKKMGRP RKPNPRVFGP EWSIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-377111286177758Disease resistance RPP13-like protein 4
6j5t_F2e-377111286177758Disease resistance RPP13-like protein 4
6j5t_G2e-377111286177758Disease resistance RPP13-like protein 4
6j5t_L2e-377111286177758Disease resistance RPP13-like protein 4
6j5t_O2e-377111286177758Disease resistance RPP13-like protein 4
6j5u_A2e-377111286177758Disease resistance RPP13-like protein 4
6j5v_A2e-377111286177758Disease resistance RPP13-like protein 4
6j5w_A2e-377111286177758Disease resistance RPP13-like protein 4
6j6i_C2e-377111286177758Disease resistance RPP13-like protein 4
6j6i_F2e-377111286177758Disease resistance RPP13-like protein 4
6j6i_G2e-377111286177758Disease resistance RPP13-like protein 4
6j6i_L2e-377111286177758Disease resistance RPP13-like protein 4
6j6i_O2e-377111286177758Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G104400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459691.20.0uncharacterized protein LOC8057272
TrEMBLA0A1B6QAD60.0A0A1B6QAD6_SORBI; Uncharacterized protein
STRINGGRMZM2G382273_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Representative plantOGRP1356923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.14e-12Disease resistance protein (TIR-NBS-LRR class)