PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G081300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 345aa    MW: 37763.1 Da    PI: 9.9666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G081300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20102151255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +grW+AeIrdp     r+r++lg+f+taeeAa+a++aar++++g
  Sobic.002G081300.1.p 102 RFTGVRRRP-WGRWAAEIRDPLL---RRRVWLGTFDTAEEAAAAYVAARLRIRG 151
                           589******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.18E-14101134No hitNo description
SMARTSM003804.3E-24102166IPR001471AP2/ERF domain
PfamPF008472.0E-13102151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-22102152IPR001471AP2/ERF domain
PROSITE profilePS5103219.902102159IPR001471AP2/ERF domain
PRINTSPR003679.3E-10103114IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17103152IPR016177DNA-binding domain
PRINTSPR003679.3E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPSLKEEVM KAVEEAKRSA AAAAAPTRCR VVRIIVHDED ATDSSSSSED EVDEEVEQEG  60
EERPGSAGSV SVKRSRVLLQ SAGCGGEEEE EDEDEEGEGG ARFTGVRRRP WGRWAAEIRD  120
PLLRRRVWLG TFDTAEEAAA AYVAARLRIR GGPKASSSSD LLPPPAAAHR PREKQLPPPP  180
PPLPQREKKQ LPPPPTQREK QLPLPPPPLP QREKQQLPPP PPPLLPPKKQ LQYPPPPLLP  240
PKKQQLYPPP LPLPPKKQQH HHHHHHHPPL PTLPPKKRLA PPPLLPESKR QCLASSPSEP  300
PRFVPLPVWA LMSGSGKRKK RSGCGGRVPA LHTPAPAAEE TGRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-121011511364Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G081300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9533611e-100EU953361.1 Zea mays clone 1402793 membrane protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310499.13e-72formin-like protein 3
TrEMBLA0A1B6Q9V50.0A0A1B6Q9V5_SORBI; Uncharacterized protein
STRINGSb02g006780.15e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-13cytokinin response factor 3