PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G081000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 233aa    MW: 25646.1 Da    PI: 5.8841
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G081000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.5e-18956148
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          k+ien+  rqv fskRr+g++KKA+ +S+LC+a v  ++fss gk + 
  Sobic.002G081000.1.p  9 KPIENENTRQVCFSKRRQGLFKKASDISILCGAMVGSVVFSSFGKSFS 56
                          78****************************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.544161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-25173IPR002100Transcription factor, MADS-box
CDDcd001202.26E-22247No hitNo description
PRINTSPR004049.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MARRKIEIKP IENENTRQVC FSKRRQGLFK KASDISILCG AMVGSVVFSS FGKSFSFGHP  60
SIDDVANRFL YSVTHDGPVS SGANHDNSLA VTGTVQGLNM EYLELQQSLD SQKKKKERLL  120
EATKKEMGEH MMQFLNANIL ELGLDELQEF QKLLEAIDVL QTEGSAIQQP MDIASALQYQ  180
FGEHMSVNSM AFTATSSSNR FIYGFEVNDP LLSGGLHDVC GLGNFPCNLN HG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G081000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459567.11e-115agamous-like MADS-box protein AGL23
TrEMBLA0A1B6Q9X61e-171A0A1B6Q9X6_SORBI; Uncharacterized protein
STRINGSb02g006700.11e-115(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-14AGAMOUS-like 29