PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G071600.1.p
Common NameSb02g006023, SORBIDRAFT_02g006023
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 317aa    MW: 33765.5 Da    PI: 8.578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G071600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1950100155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Sobic.002G071600.1.p  50 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 100
                           79********.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-1950108IPR016177DNA-binding domain
PfamPF008473.3E-1350100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-2851108IPR001471AP2/ERF domain
PROSITE profilePS5103219.83651108IPR001471AP2/ERF domain
CDDcd000185.64E-3051110No hitNo description
SMARTSM003809.1E-3451114IPR001471AP2/ERF domain
PRINTSPR003671.2E-75263IPR001471AP2/ERF domain
PRINTSPR003671.2E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MELHFQQPPQ SHPQQQYSSY QQPPATTKET KPRTRTKCGS GGGGGGGSGS KFVGVRQRPS  60
GRWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG ANTRTNFAAA GAHASPPDSP  120
LAARIRGILN HKRMKKNASQ QHTVNFFPAG AYHRAAGAAA TAASTTSTST ITTTTSSVSP  180
SSSPSSSIVS FAMSSHGVRT PILPAAQSIA EEAYRPYLVS GGGEEFQLAT RQYEQQWALN  240
NTSIPPSDGC DMANENACLV VAEADKVKLE KKSSASHHGG MDRVQDKDVF EAGNDASDSL  300
WDLPPICPLS CRSLMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1441107471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G071600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042739e-62AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149639e-62AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126159e-62CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459520.20.0ethylene-responsive transcription factor RAP2-11 isoform X1
TrEMBLA0A1B6Q9T20.0A0A1B6Q9T2_SORBI; Uncharacterized protein
STRINGSb02g006023.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-25related to AP2 11