PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G069400.1.p
Common NameSb02g005840, SORBIDRAFT_02g005840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 339aa    MW: 35961.3 Da    PI: 5.467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G069400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17190237555
                   AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Sobic.002G069400.1.p 190 GVRKRP-WGKFAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 237
                           9*****.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.14187245IPR001471AP2/ERF domain
PRINTSPR003674.1E-7188199IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21189247IPR016177DNA-binding domain
CDDcd000181.48E-14190246No hitNo description
SMARTSM003801.7E-30190251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-27190246IPR001471AP2/ERF domain
PfamPF008473.6E-12190237IPR001471AP2/ERF domain
PRINTSPR003674.1E-7211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MELQFSSSYY YGHDAGAVSA AYAHCDYGLQ RYDDSPYYST SAMASSGFFQ PSSAAYYDDD  60
AAIAYSGDGD HHPSSSSTVW GASSSSDATP SHHQQQLLHF GGGADEYYSY QQDGMGAVDM  120
DQFSVLMGAT CISTTSSSSS ASTTTNTPLA YPSPATTTVQ SSAVVHGASP CDYLQQEAAS  180
GGDRDAPLIG VRKRPWGKFA AEIRDSTRNG ERVWIGTFDT PEAAALAYDQ AAYSMRGPAA  240
VLNFPVEHVQ ESLRALGLIS DGAADDSPVL ALKRRHCIRK RLPKNKKAAA GKEQTKAATS  300
SHGHGHAKQK PQAASCVLEL EDLGADYLEQ LLALSDHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-261902481775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.125349e-32embryo| leaf| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G069400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-120KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653664.11e-108ethylene-responsive transcription factor 15
TrEMBLC5XCK50.0C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-35ethylene response factor 1