PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G069166.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29038.6 Da PI: 7.2667 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.6e-17 | 106 | 153 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + ng +r+++g+f+t+e Aa +++a+ +++g Sobic.002G069166.1.p 106 GVRKRP-WGKYAAEIRDSTRNG--QRVWIGTFDTPEAAALVYDQAAYSMRG 153 9*****.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.218 | 103 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 104 | 163 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-6 | 104 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-11 | 105 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-25 | 106 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-29 | 106 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-21 | 106 | 162 | No hit | No description |
PRINTS | PR00367 | 1.1E-6 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGGAGVVDMH QFSALMGAAS ISKNSTTSGS GCSASSTTFY APAAACLPHH QHGEVMAPAY 60 AFALPAAMMQ MQPDDVVNGW SRRDLKLRQK EKENAAAAEE APALIGVRKR PWGKYAAEIR 120 DSTRNGQRVW IGTFDTPEAA ALVYDQAAYS MRGPAAVRNF PVEHVEESLR ALRLSGGGGG 180 AGDGDGDGDS PVLALKRRHC IRKRLRKNKK IATAGMQGCG HGSAEAREQT AATASHGQKD 240 KITAGAGVLE LEDLGTDYLE ELLALSDQCS EQFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-25 | 106 | 164 | 17 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G069166.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727883 | 9e-71 | KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 4e-75 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1W0W2N4 | 0.0 | A0A1W0W2N4_SORBI; Uncharacterized protein | ||||
STRING | Si033089m | 2e-74 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-37 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G069166.1.p |