PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G050700.3.p
Common NameSb02g004250, SORBIDRAFT_02g004250
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 764aa    MW: 82165.9 Da    PI: 6.4943
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G050700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.8e-16449487240
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Sobic.002G050700.3.p 449 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 487
                           589**********************************96 PP
2TCR49.68e-16534573140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Sobic.002G050700.3.p 534 RHKRGCNCKKSSCLKKYCECYQGGVGCSTNCRCESCKNTF 573
                           589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17448489IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.911449574IPR005172CRC domain
PfamPF036388.6E-12451486IPR005172CRC domain
SMARTSM011145.1E-16534575IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-11536572IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MNMQDSPVFS FLNNLSPIEP LKSAYNTNSL QGFQSINITS ISSIFTSPHD NVNKEPRLPK  60
SSLGDISENE VCADGADTNK PSKSSNAVRL FACTSTVTRE THSVTCSGVV DPPTGPCDLA  120
QPGQFDNGSP DHNTTPCHGV RSDLKLDKTR KLEAAQTVKN TLEKRKCLFS TDIQLLDGSS  180
EPVNDNDQVL GCEWSDLIST TSAELLAFDS TMDEHHRGVH LAAKNAESCG YLLSKLTGDG  240
DVSDRAHPSA SGQVYYQELV MGEDQTENAE IFQDGQETIS TEEIQDNICE ANGCLPLEYK  300
VEGQQQRGVR RRCLVFEASG FSNSVVKKGT VENLSVSTCK GKSPVQTQPR GLRGIGLHLN  360
ALALTPKGKM ACQDPTASAL LPSSASEKDV HGRLLSAGEN FTHSGGELLE FPVDDCSAGG  420
FPVNDHVSGQ SVSPQKKRRK TDNGDDGEAC KRCSCKKSKC LKLYCECFAA GVYCSEPCSC  480
QGCLNKPIHE EIVLSTRKQI EFRNPLAFAP KVIRMSDAGL ETGEDPNNTP ASARHKRGCN  540
CKKSSCLKKY CECYQGGVGC STNCRCESCK NTFGRRDAES ELTEEMKQES EQTENCSQEK  600
ENGQQKANVQ SEDHPLLDLV PITPPFDLSS SLLKLPNFSS AKPPRPSKPR SVNSRSSASK  660
ATATVQPCKS SKIAVSGIDE EMPDILKEPN SPSNCVKTTS PNGKRVSPPH NALSVSPNRK  720
GGRKLILKSI PSFPSLAGDT ISGSAMNNTD STFSVSPLTL GPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1545157112120Protein lin-54 homolog
5fd3_B8e-1545157112120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435439KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G050700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459413.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A1W0W2A90.0A0A1W0W2A9_SORBI; Uncharacterized protein
STRINGSb02g004250.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-77TESMIN/TSO1-like CXC 2