PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G039900.2.p

Common Name

Sb02g003433, SORBIDRAFT_02g003433

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 937aa MW: 101954 Da PI: 5.855

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G039900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.5	5.6e-25	15	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aC++lrr+C+++Cv+apyf ae+ fa+vh +FGasnv+k+l+++ +e+r a+++lv eA+ar+ dP G v+ ++ lq+ + Sobic.002G039900.2.p 15 PCGACRTLRRRCVPGCVFAPYFTAED---FAAVHGVFGASNVSKMLERIeLPEQRAVAAATLVEEARARQLDPTFGRVSYLRILQEVND 100 7*******************9987...****************56788******************************* PP DUF260 89 qlkaelallkee 100 ++++++++++ee Sobic.002G039900.2.p 101 KARTQVDEAREE 112 **99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.552	14	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-26	15	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MPDDEQAVAV AVAAPCGACR TLRRRCVPGC VFAPYFTAED FAAVHGVFGA SNVSKMLERI 60 ELPEQRAVAA ATLVEEARAR QLDPTFGRVS YLRILQEVND KARTQVDEAR EEIAREFGAL 120 AASQPVDVAA AAPAARVEAR AQVDAALKHA REQDARLIGV RMANEARWRE LHEPATGTVT 180 GKHAGNGKGI DVVKRHREPT LSEQTMLMLR AAKQRISRTT GFPDEGERQQ MAVVDAEREK 240 ALFMRQAAPA KQHDYHHHHL GAQHGDTEPP RIPEVYGNGQ LTASADASRE EAMRSVQAPA 300 AAPPQQLDSA GQHAGTGQPR HAGDAAAGRT PGQGSTSVLL EAMMQLAGAT GEQQHLVAQH 360 AENEHAVALG HGHPVDISQE MMQLQELLDM AELARNEQMM KNDVMTEMGQ WDAAAGVARE 420 PDVMTMTQQM PANAWQHRDP APQYAGMCDG RPLEMPQQME EASTAELAKT TTGNMSQQFA 480 WAQQHHDPAA AQHASPCHHQ MAAASASQVA SEQDMLLLLQ QHQVGAAELP STGGARQFDN 540 LAAQYGDTEL TLGYGHPDMH QQVVAAGQVA RVQDMNSPQL AARAHQHHAQ NGLDIALGNG 600 HPGDAETQAM LQELAAILEL ADERAMIRKQ WEQDARTMMT QQDPDAAWLQ EMLGQKQIEK 660 ASRPDGPDLD KRLEIMSRQA EARHAQKELG ITPDGSAQGI LQAQELSAMA EMQRKREMVM 720 RQFVAAERAR EQKLEMLMRQ FVAAARAREQ ELITQQAAAA QQQPVAQQYS ETELDVSLGQ 780 GHGHPYWHQP TVQEMVQKKQ LPTVQQMLEE EQLAEAVGFG RHQPDTTLVQ QVPAYANGEH 840 GGGAGATMAF LSPGYAKAAP FRVDQQLQTN GHQMDSSLPP MPPSLSQLHA QASHQQRTDG 900 GGQGLSSDLA AYLHYESLSR HGTAGFNRGS EGPERR*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MPDDEQAVAV AVAAPCGACR TLRRRCVPGC VFAPYFTAED FAAVHGVFGA SNVSKMLERI  60
ELPEQRAVAA ATLVEEARAR QLDPTFGRVS YLRILQEVND KARTQVDEAR EEIAREFGAL  120
AASQPVDVAA AAPAARVEAR AQVDAALKHA REQDARLIGV RMANEARWRE LHEPATGTVT  180
GKHAGNGKGI DVVKRHREPT LSEQTMLMLR AAKQRISRTT GFPDEGERQQ MAVVDAEREK  240
ALFMRQAAPA KQHDYHHHHL GAQHGDTEPP RIPEVYGNGQ LTASADASRE EAMRSVQAPA  300
AAPPQQLDSA GQHAGTGQPR HAGDAAAGRT PGQGSTSVLL EAMMQLAGAT GEQQHLVAQH  360
AENEHAVALG HGHPVDISQE MMQLQELLDM AELARNEQMM KNDVMTEMGQ WDAAAGVARE  420
PDVMTMTQQM PANAWQHRDP APQYAGMCDG RPLEMPQQME EASTAELAKT TTGNMSQQFA  480
WAQQHHDPAA AQHASPCHHQ MAAASASQVA SEQDMLLLLQ QHQVGAAELP STGGARQFDN  540
LAAQYGDTEL TLGYGHPDMH QQVVAAGQVA RVQDMNSPQL AARAHQHHAQ NGLDIALGNG  600
HPGDAETQAM LQELAAILEL ADERAMIRKQ WEQDARTMMT QQDPDAAWLQ EMLGQKQIEK  660
ASRPDGPDLD KRLEIMSRQA EARHAQKELG ITPDGSAQGI LQAQELSAMA EMQRKREMVM  720
RQFVAAERAR EQKLEMLMRQ FVAAARAREQ ELITQQAAAA QQQPVAQQYS ETELDVSLGQ  780
GHGHPYWHQP TVQEMVQKKQ LPTVQQMLEE EQLAEAVGFG RHQPDTTLVQ QVPAYANGEH  840
GGGAGATMAF LSPGYAKAAP FRVDQQLQTN GHQMDSSLPP MPPSLSQLHA QASHQQRTDG  900
GGQGLSSDLA AYLHYESLSR HGTAGFNRGS EGPERR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-25	14	129	10	131	LOB family transfactor Ramosa2.1
5ly0_B	4e-25	14	129	10	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G039900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037311	2e-71	BT037311.1 Zea mays full-length cDNA clone ZM_BFb0162E24 mRNA, complete cds.
GenBank	KJ728267	2e-71	KJ728267.1 Zea mays clone pUT6544 LOB transcription factor (LOB2) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310480.1	0.0	uncharacterized protein LOC8081141
TrEMBL	A0A1W0W288	0.0	A0A1W0W288_SORBI; Uncharacterized protein
STRING	Sb02g003433.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16457	9	13
Representative plant	OGRP19549	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	3e-25	LBD family protein

Link Out ? help Back to Top
Phytozome	Sobic.002G039900.2.p
Entrez Gene	8081141