PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G038500.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 324aa    MW: 34778.3 Da    PI: 10.0224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G038500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA85.58.1e-27179238158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           dep+YVNaKQ+++Il+RR +Rak++ +++     + rkpy+heSRh hAlrR+Rg+gGrF
  Sobic.002G038500.3.p 179 DEPVYVNAKQFNGILRRRLARAKAACRDRrvSGGNRRKPYMHESRHLHALRRARGTGGRF 238
                           79***********************976643235789**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-28177241IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.9178241IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.4E-24180238IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-21181203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-21215238IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRSAFQDHGL GFHQAITDGG GGGAGPATTA APWWAAAPHQ GCAAARFPII SSSSVSGDPD  60
PRRHELKFHE PPGAAAMAAA AHPELLLHKY HHGRFDLSIG QSMMFSTNAI PDHHSYGTAS  120
YYPFYGAHAL VCICHTDPFC LGCFSTRLVS HHSIYFYICK KKKKMKHGRV LLPPAIAADE  180
PVYVNAKQFN GILRRRLARA KAACRDRRVS GGNRRKPYMH ESRHLHALRR ARGTGGRFLN  240
TRSRDDGDPH KPPNEGSAAS NKAKAKAAAA AATRLQQQED RQADALFLSS LVNVAGGDGD  300
GGEATAWPGC SAPSRGCCDL LRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-16179240261HAPB protein
4g92_A7e-16179240261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G038500.3.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682171e-88EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750231e-88EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461481.21e-148nuclear transcription factor Y subunit A-10
TrEMBLA0A1W0W2340.0A0A1W0W234_SORBI; Uncharacterized protein
STRINGSb02g003320.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Representative plantOGRP1954822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-17nuclear factor Y, subunit A10