PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G038500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YA | ||||||||
Protein Properties | Length: 288aa MW: 30530.1 Da PI: 10.1076 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 85.8 | 6.7e-27 | 143 | 202 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak++ +++ + rkpy+heSRh hAlrR+Rg+gGrF Sobic.002G038500.1.p 143 DEPVYVNAKQFNGILRRRLARAKAACRDRrvSGGNRRKPYMHESRHLHALRRARGTGGRF 202 79***********************976643235789**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-28 | 141 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 33.9 | 142 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.7E-24 | 144 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.9E-21 | 145 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.9E-21 | 179 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MRSAFQDHGL GFHQAITDGG GGGAGPATTA APWWAAAPHQ GCAAARFPII SSSSVSGDPD 60 PRRHELKFHE PPGAAAMAAA AHPELLLHKY HHGRFDLSIG QSMMFSTNAI PDHHSYGTAS 120 YYPFYGAHAL HGRVLLPPAI AADEPVYVNA KQFNGILRRR LARAKAACRD RRVSGGNRRK 180 PYMHESRHLH ALRRARGTGG RFLNTRSRDD GDPHKPPNEG SAASNKAKAK AAAAAATRLQ 240 QQEDRQADAL FLSSLVNVAG GDGDGGEATA WPGCSAPSRG CCDLLRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-16 | 143 | 204 | 2 | 61 | HAPB protein |
4g92_A | 5e-16 | 143 | 204 | 2 | 61 | HAPB protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G038500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 1e-114 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461481.2 | 1e-157 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A1B6Q940 | 0.0 | A0A1B6Q940_SORBI; Uncharacterized protein | ||||
STRING | Sb02g003320.1 | 1e-152 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 1e-20 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G038500.1.p |