PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G035500.1.p
Common NameSb02g003070, SORBIDRAFT_02g003070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 462aa    MW: 47881.2 Da    PI: 9.9738
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G035500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.42.9e-39692142133
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasn 84 
                            g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a  ai++l+++      +      + ++s  + +++
  Sobic.002G035500.1.p  69 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIRAAADAIDKLPSLdaaagfP------AHPASAAKDHHA 151
                           689*************************************************************5555332......222222222222 PP

                   TCP  85 sssg.............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                           ++ +             ++ + + +s+ s++s+ s+l+l++ esr kar+rarer++    ++
  Sobic.002G035500.1.p 152 HHGPppagddgdehhhhQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAVARDKD 214
                           222244555666677656777777999***************************998766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-4170209IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9171129IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992193213IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEVEAVGCAG AAVAGGGGAG GKRGRAKAGA GAEPEPKRRA VAVAVPPAAG APWAQQHPAS  60
RIYRVSRASG GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGYDQ PSKAIEWLIR  120
AAADAIDKLP SLDAAAGFPA HPASAAKDHH AHHGPPPAGD DGDEHHHHQQ LTRSGCSSTS  180
ETSKGSVLSL SRSESRVKAR ERARERSAVA RDKDKDKDPA AAANDGTARR VVATTTSAQA  240
ASFTELLTGM AAASAAAPAD HKHHQQSSVS WGQTTTVSAA TADYIGFAQP RKGAGHAMAH  300
AFAAPAPHLG NIASIAMAPA AQHFGLASGA VTVASGGGEP NAEMTHFSFL QDHFMPVHAA  360
PAPAPTPAIE YNLNFSMSSG LVGVNSRGTL QSNSQPHISG HHHHQQQLQR LSTPLDAPNI  420
PFLFSPPAAA AAAPTTAEGQ FAAFQLWNGF QHADMKEKGK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2776130155Putative transcription factor PCF6
5zkt_B5e-2776130155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G035500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459354.10.0transcription factor PCF6
TrEMBLC5X9K30.0C5X9K3_SORBI; Uncharacterized protein
STRINGSb02g003070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-37TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2