PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G026600.1.p
Common NameSb02g002410, SORBIDRAFT_02g002410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 383aa    MW: 42180.6 Da    PI: 5.3789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G026600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.9e-161561349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +en++ r+ tf+kRr g++K A  LS+L++a++a+++ s++ k++ +
  Sobic.002G026600.1.p 15 VENDIDRSFTFIKRRDGLFKSAADLSILTGAKIAIVVESEREKMFAF 61
                          69******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-17564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.082565IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-10727IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-17875IPR002100Transcription factor, MADS-box
PfamPF003194.2E-161561IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-102742IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-104263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPKPKRSRRT GIHYVENDID RSFTFIKRRD GLFKSAADLS ILTGAKIAIV VESEREKMFA  60
FGTPSAGPII DSFLSGDVEC PIPDEVQKAN IISLENKLVR LGNLKDVQDT RMRVSMARSM  120
EIQESSKIAK LVYGEIDDLS VDELNGLLHG LTRINQEIED QLRASQIQVP PRHLPWSSIQ  180
TPLQIPRSSA LPEPSRLQPS LLNLTILPSP QAPPVPLLQH SLMPRQPWVA DMLPLPNEAH  240
KYNDQSQQLV SNGNPSGHFW LPSLLSSVPP LPPPPSSEHR LPLEVDLPIQ ALSLNPALPS  300
QSHDTNTHSI LENNDISLFT GSAEGNNYPA DGSQFASYQW NSLSPSNDLY YGAYGGQDVG  360
GHDMPGPSSL NLGTYDWVSR PY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G026600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5X8U80.0C5X8U8_SORBI; Uncharacterized protein
STRINGSb02g002410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-12AGAMOUS-like 62