PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G026500.1.p
Common NameSb02g002400, SORBIDRAFT_02g002400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 449aa    MW: 49016.2 Da    PI: 7.0081
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G026500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-161160150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          k ien+  r+++fskRr g++K A  LS+L++a++a+++ +++gk+  +s
  Sobic.002G026500.1.p 11 KYIENNNARSISFSKRRDGLFKMAANLSTLTGARIAIVMEAENGKMSGFS 60
                          579*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-14162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.955363IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-9525IPR002100Transcription factor, MADS-box
CDDcd002668.73E-17571No hitNo description
SuperFamilySSF554556.8E-16873IPR002100Transcription factor, MADS-box
PfamPF003193.3E-171358IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPRRPRRSGI KYIENNNARS ISFSKRRDGL FKMAANLSTL TGARIAIVME AENGKMSGFS  60
APSFGPVMDS FLSGEEGGAP EGPDEQEKDM IAKLQSEILQ LEENKAMQEQ RTMESLARVK  120
AIRERSRMGK LIYSNVDDLC VDELYELLRG LARISQEIRA LLAPPPPPPP RLVEIGGFRG  180
PPPPLRLSNP PQHSQVQQPP RRLPWVSSQS QPSLPVLRSS HTLPQSIRPQ FSLMTSPPVQ  240
PSSLQAISRM LLRNTQLSQH SSVMVRPQAP VMPLPNDEAH QYNYQRLGVA ITHNTSGHFS  300
QTSLLSSLPP PPPPLPMSAL QIPSQRFVEV EIPFQAMNLN PDAPSQNHAN PHSSLENNEV  360
SHFFGGISGT TSTHPFSGNQ QPSLIPRGAN RGHHAPGCHN VPCPSGSNGE TYEWLNKTLL  420
ESSSEGGSSS DDDGAGDSLG DIDWFGDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G026500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653601.11e-140uncharacterized protein LOC103633666
TrEMBLA0A1W0W2220.0A0A1W0W222_SORBI; Uncharacterized protein
STRINGSb02g002400.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-12MIKC_MADS family protein