PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G008600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 273aa    MW: 29422.1 Da    PI: 10.111
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G008600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.4e-3362119259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Sobic.002G008600.2.p  62 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVVTTYEGQHCHH 119
                           8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3346120IPR003657WRKY domain
SuperFamilySSF1182902.75E-2853119IPR003657WRKY domain
PROSITE profilePS5081129.65456121IPR003657WRKY domain
SMARTSM007741.6E-3861120IPR003657WRKY domain
PfamPF031067.0E-2662119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQQAQRRPVT GRAYTLSTQH MASSPSKPPA PGKTTKSSAA GQKRARQPRF AFMTKSDVDH  60
LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVVT TYEGQHCHHT  120
VAFPRAHHLH AALAAAGHHH MPFNFSAAAH HHHLYGTTSG VVTDHGHLPP LLLPTTPAPQ  180
HNALNDSDNN GSPLACRTST TTSSLLRPLD CNHQELLLAA AASYPLSSSA AMSSMPVPSM  240
STTTTTSLPP PASSAVDKGL LDDMVPPAMR HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2651118774Probable WRKY transcription factor 4
2lex_A5e-2651118774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G008600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418594e-79AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308556.10.0uncharacterized protein LOC8054521
TrEMBLA0A1B6Q8N50.0A0A1B6Q8N5_SORBI; Uncharacterized protein
STRINGSb02g000960.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-54WRKY DNA-binding protein 57