PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G531100.1.p | ||||||||
Common Name | Sb01g049400, SORBIDRAFT_01g049400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 21924.4 Da PI: 5.338 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 27 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r++ g+Wv+eIr+p++ + r++lg++ +e+Aa+a++aa+++l+g+ Sobic.001G531100.1.p 27 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPAPEMAAAAYDAAALALRGA 77 68*****975..*********954...49************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-11 | 27 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-23 | 28 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-26 | 28 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-17 | 28 | 84 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.638 | 28 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-12 | 29 | 84 | No hit | No description |
PRINTS | PR00367 | 2.3E-6 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MEREQEQEAG TAQQLLGRRV RADTRHPVYR GIRYRGGKWV SEIREPRKSN RIWLGTYPAP 60 EMAAAAYDAA ALALRGAEAA LNFPGAAMSR PAPASCSPDD IRAAAAAAAA AVIGRSHSPQ 120 VGGEAAAGGG CGASTWSSGA GAQGQVPEHR AGDRRIVDED DVFQVPRLLA GMAEGLMMSP 180 PRLVGPATDG AVLLEEDGSE DGVVSLWDHS * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G531100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468636.2 | 1e-148 | ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1B6QQY6 | 1e-146 | A0A1B6QQY6_SORBI; Uncharacterized protein | ||||
STRING | Sb01g049400.1 | 1e-146 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 8e-27 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G531100.1.p |
Entrez Gene | 8077989 |