PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G525900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 627aa    MW: 66680.7 Da    PI: 6.628
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G525900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-093724091954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Sobic.001G525900.1.p 372 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 409
                           664459******************************88 PP
2BELL87.31.7e-28236304472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           elq+ k kL  +leeVd+rY++y+eq++++++ Feavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  Sobic.001G525900.1.p 236 ELQRLKDKLYIMLEEVDRRYRRYCEQMRALAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGVVAQL 304
                           89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-46162302IPR006563POX domain
PfamPF075264.1E-43168300IPR006563POX domain
PROSITE profilePS5007111.969350413IPR001356Homeobox domain
SMARTSM003896.6E-9353417IPR001356Homeobox domain
CDDcd000864.04E-12353414No hitNo description
SuperFamilySSF466892.35E-17354420IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-28356419IPR009057Homeodomain-like
PfamPF059208.3E-18370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAAAAAG ATAMDDDDVG APELYGLHAD MEFLGMRGLA AMPAAAHHHH  60
HHGHGHSKAG VLVDDDAGPD GSGSNTDDAT MRFLSEQQHH PSHQQAPLSL SLCRPDGGGV  120
GVTTSLHEQQ QQLGGGSSRH HQQQHPAPPA AWMQQHDYSP QPQHAWHLRG SRFLVPAQQV  180
LQEFCSLPVD SSSAAASSKR ASKPSSHQQQ EDGGEGSSSS ASWAPSLQIQ AMDALELQRL  240
KDKLYIMLEE VDRRYRRYCE QMRALAGGFE AVAGERAAAA YTALASRTIS RHFRSLRDGV  300
VAQLQAARRA LGEKDVAVPG MTRGDTPRLR VLDQCIRQQK ALTQAGMVEA HPWRPQRGLP  360
ERAVTILRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYV  420
EEMKAEGQLE DGGGGDQQQG QGVSNNPNPS NAAAEAADDG CGDNGAVVVD RKPTRAQLLH  480
DAGSLASVVN IGSGSRAGAA ARPLENFGIV DHLDFDAYGG GHHAGGGFGG GVSLTLGLQQ  540
HDSHDGGVNI AFGAPPTPAH HHGGAAGYLF APTTTAGHQM GGGLHPGQQH HVQFGGASID  600
GEAAHGQEHY RGLQGAGFHL LRDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-17359417563Homeobox protein Meis2
4xrm_B8e-17359417563Homeobox protein Meis2
4xrs_A6e-17359416158Homeobox protein Meis1
4xrs_B6e-17359416158Homeobox protein Meis1
5bng_A6e-17359417159Homeobox protein Meis2
5bng_B6e-17359417159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G525900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303886.10.0homeobox protein BEL1 homolog
RefseqXP_021303890.10.0homeobox protein BEL1 homolog
RefseqXP_021303891.10.0homeobox protein BEL1 homolog
TrEMBLA0A1B6QQV60.0A0A1B6QQV6_SORBI; Uncharacterized protein
STRINGPavir.Ib00072.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-79TALE family protein