PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G517800.1.p | ||||||||
Common Name | Sb01g048290, SORBIDRAFT_01g048290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Nin-like | ||||||||
Protein Properties | Length: 906aa MW: 100630 Da PI: 5.725 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.7 | 2.4e-28 | 599 | 649 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Sobic.001G517800.1.p 599 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 649 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.938 | 588 | 669 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.3E-26 | 601 | 649 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 6.5E-25 | 817 | 902 | No hit | No description |
SuperFamily | SSF54277 | 1.82E-22 | 818 | 901 | No hit | No description |
PROSITE profile | PS51745 | 21.781 | 820 | 903 | IPR000270 | PB1 domain |
SMART | SM00666 | 5.1E-24 | 820 | 903 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.5E-16 | 821 | 902 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.48E-40 | 821 | 901 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 906 aa Download sequence Send to blast |
MEKAPQTDDD GLLACGVMEM DDIAVGDLDL MEELFMAAPG FDFSDFSQPG PGGASPGSCF 60 SPLFDICSTT TTATPPPAPE PAGDDDQAAA APPPRRGWVF QPRHEVEATV KERLRRALER 120 IASLSQTQPG ELLAQVWVPT VIGDRQVLTT CGQPFWLDRR NERLANYRTV SMKYQFSADE 180 TARADLGMPG RVFVGRVPEW TPDVRYFSTE EYPRVRHAQY FDIRGSVALP IFEPRSRACL 240 GVVELVMTTE KVNYNAEIQN ICSALKEVDL RSSDVSSDPR AKVTDTSYRA TIPEIVDVLR 300 TVCETHKLPL AQTWIPCICQ AKRGSRHTDE KLKYCVSTVD EACYVRDLNV KGFHEACSEH 360 HLFRGEGVVG RAFGTNEPCF SEDITTSSKV QYPLSHHAKL FSLRAAVAIR LRSITTGSLD 420 YVLEFFLPVD CIEIEQQRAM LNSLSITIQQ TCYTLRVVSL KELVDEGSIE TSALTPPEYA 480 KTMHENLDEV CSGIDAPART ASLETSEEVS SWIASLVCAQ NKGVKEMDGD LPFGFSKQED 540 EGFSVTAGWH TTPVIGPEGS IFSGIKQHED YKVKEVTCLR DPSSSKLGKT VEKRRTKMEK 600 TVSLEELRKH FAGSLKEAAK NLGVCPTTLK RICRQHGINR WPSRKIKKVG HSLKKLQMVI 660 DSVHGNEGTV QLSSLYENFT KTTWSERELQ GDASYPLSEE KGLLEPSVPD QHCEGRFTSH 720 TSGSNSLSPS CSQSSNSSHG CSSGSKSQQH GSASQLAVKK EVFMEENQSS TLLKAASHAE 780 LQMCPEERPV TLPRSHSQML LSEQKPVENM TGMQMSKPDS LKIKAMYGEE RCIFRLQPSW 840 GFEKLKEEIL KRFGVAQEMH VDLKYLDDES EWVLLTCDAD LLECIDVYKS SNTQTVRISV 900 HSNGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4803 | 0.0 | embryo| leaf| ovary |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G517800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465923.1 | 0.0 | protein NLP1 | ||||
Refseq | XP_021317584.1 | 0.0 | protein NLP1 | ||||
Swissprot | Q10S83 | 0.0 | NLP1_ORYSJ; Protein NLP1 | ||||
TrEMBL | C5WZW2 | 0.0 | C5WZW2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g048290.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11025 | 32 | 41 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G517800.1.p |
Entrez Gene | 8085681 |
Publications ? help Back to Top | |||
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