PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G515800.1.p
Common NameSb01g048130, SORBIDRAFT_01g048130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 328aa    MW: 36015.6 Da    PI: 7.8693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G515800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.2e-49171433128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eel+++yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++
  Sobic.001G515800.1.p  17 PGFRFHPTEEELLSFYLSRVVHGKQLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRS 104
                           9*************************99.99***************99999************************************** PP

                   NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + s+   ++++glkktLvfy+grap+g+ktdWvm+eyrl
  Sobic.001G515800.1.p 105 IRSSgdAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 143
                           ***9777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-584169IPR003441NAC domain
PROSITE profilePS5100555.76815169IPR003441NAC domain
PfamPF023655.4E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAMMAAAPSM EVEQDLPGFR FHPTEEELLS FYLSRVVHGK QLHFDIIGTL NIYRHDPWDL  60
PAMAKIGERE WYFFVPRDRK AGNGGRPNRT TERGFWKATG SDRSIRSSGD AKRVIGLKKT  120
LVFYQGRAPR GTKTDWVMNE YRLPDHAAAG RAAPPAPKED MVLCKIYRKA TPLKELEQRA  180
SAMEEMQRRS SAARAASLAQ AAGSAVDDYL SVSSEDAHDS TFLHFPSSSS SPPSGDSYGA  240
PAPAPREAKT EAADATTVTV ASSSSLVHAS SMAAVQPPAV RHGDLPTLQV PTNNLGVADW  300
TQMQDPFQLR SPWQDQLFFS PLAHLLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-491117110170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G515800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465919.10.0NAC domain-containing protein 35
SwissprotQ10S651e-148NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLC5WZU60.0C5WZU6_SORBI; Uncharacterized protein
STRINGSb01g048130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-83NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]