PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G506066.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 243aa MW: 24927.1 Da PI: 9.1311 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57 | 2.6e-18 | 138 | 171 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR+gp g++tLCnaCG+++++ + Sobic.001G506066.1.p 138 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 171 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.018 | 132 | 168 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-15 | 132 | 182 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 135 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.0E-14 | 136 | 169 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.63E-15 | 137 | 186 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 138 | 163 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.6E-16 | 138 | 171 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAGCGAAADG NPAAAADELA SGADASLNAF FDHAGLDLAA AGGGQGADEE EELEWLSNMD 60 AFPSVETMSA AVEAAPSAPA AGVGRLEPLP HAHAVGPRTK GLRRRRRVTA PWSVPPVLPP 120 APPLPAPPAG GAAPRRRCTH CASEETPQWR QGPAGPSTLC NACGVRFKSG RLFPEYRPIL 180 SPTFSPLLHS NSHRRVMEMR RHVEVETATA TATAGGRAGA RARRAERAAA RAAAAATTTK 240 GK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G506066.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018418 | 1e-120 | BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317517.1 | 1e-170 | GATA transcription factor 7-like | ||||
TrEMBL | A0A1Z5SBE7 | 1e-168 | A0A1Z5SBE7_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G532534_P01 | 3e-90 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-26 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G506066.1.p |