PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G502300.1.p
Common NameSb01g046920, SORBIDRAFT_01g046920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 134aa    MW: 14201.8 Da    PI: 6.7985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G502300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20959255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr ++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  Sobic.001G502300.1.p  9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 59
                          8********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32967IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-23968IPR016177DNA-binding domain
PfamPF008471.0E-14959IPR001471AP2/ERF domain
CDDcd000183.86E-30967No hitNo description
PROSITE profilePS5103224.46967IPR001471AP2/ERF domain
SMARTSM003802.1E-36973IPR001471AP2/ERF domain
PRINTSPR003673.9E-121021IPR001471AP2/ERF domain
PRINTSPR003673.9E-123349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAEEAARAY DRAAFAMKGA  60
TAVLNFPAGA AGGRETGGGG GSSSTSAPAA MGGGASRGRA PRPVPDSEKL ELECLDDRVL  120
EEMLAEDKYN KNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-296671172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179GGRETGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G502300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275121e-100KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307723.18e-91ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-32ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1B6QQI72e-89A0A1B6QQI7_SORBI; Uncharacterized protein
STRINGSb01g046920.16e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]