PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G486800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 317aa    MW: 33270.2 Da    PI: 6.3676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G486800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-202877255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  Sobic.001G486800.1.p 28 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 77
                          69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.84E-282787No hitNo description
Gene3DG3DSA:3.30.730.102.0E-302886IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-212886IPR016177DNA-binding domain
SMARTSM003801.5E-362891IPR001471AP2/ERF domain
PfamPF008476.9E-142877IPR001471AP2/ERF domain
PROSITE profilePS5103222.552885IPR001471AP2/ERF domain
PRINTSPR003673.1E-102940IPR001471AP2/ERF domain
PRINTSPR003673.1E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MESHGGRKRA WKKGPTRGKG GPQNAACEYR GVRQRTWGKW VAEIREPNKR TRLWLGSFAT  60
AEEAALAYDE AARRLYGPDA FLNLPHLRAS VSAAAAHQRL RWLPASAARG AAAAAVPAYG  120
LLNLNAQHNV HVIHQRLQEL KNGGSTAKPP PARQVVAPVD HLPAAASTSP CSTVTTHAAL  180
PPPMSCFHAL EQAVATAAMT TVDDDAEPCE AGGACPPGAD KPQLDLREFL QQIGVLKTDD  240
DDGTATAKAS FHGDAADAAG CFGGNGEFDW DALAADLNDI AGAHGGAVGV NGGFQMDDLH  300
EVDQFGTCLP IPVWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162985663ATERF1
3gcc_A1e-162985663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G486800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278740.0KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309128.10.0dehydration-responsive element-binding protein 2E-like
SwissprotQ10R181e-128DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A1B6QQ740.0A0A1B6QQ74_SORBI; Uncharacterized protein
STRINGGRMZM2G419901_P011e-168(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-45ERF family protein