PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G485200.1.p
Common NameSb01g045420, SORBIDRAFT_01g045420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 545aa    MW: 57779 Da    PI: 7.7448
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G485200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14265324155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.001G485200.1.p 265 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDREEKAARAYDLAALKYWG 324
                           789******************544454478446*************************98 PP
2AP246.31e-14369418355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.001G485200.1.p 369 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418
                           9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-19265334No hitNo description
SuperFamilySSF541711.7E-16265334IPR016177DNA-binding domain
PfamPF008474.6E-11266324IPR001471AP2/ERF domain
SMARTSM003802.9E-28266338IPR001471AP2/ERF domain
PROSITE profilePS5103218.795266332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15266333IPR001471AP2/ERF domain
PRINTSPR003679.4E-6267278IPR001471AP2/ERF domain
CDDcd000183.11E-23367428No hitNo description
SuperFamilySSF541719.15E-18367428IPR016177DNA-binding domain
PROSITE profilePS5103219.203368426IPR001471AP2/ERF domain
SMARTSM003802.9E-33368432IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18368426IPR001471AP2/ERF domain
PfamPF008471.4E-9369418IPR001471AP2/ERF domain
PRINTSPR003679.4E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGRGG YGDGGASASG DGGDGSCSSP AAAASPVPLV AMPLQPDGSL  60
HYTSAPDWRH GAAEANGPKL EDFMSVTCSS NNKRSSSSSS FYDRCSHAEQ ANKYHEVHDL  120
QPLSCGSYYH GSSGGGGNGI ALGINMNAPP CSGGGFPDHH HHHQFVSSHH GQYFLGAPLN  180
ASPPGAVPMY SAGGGGVGGS MSISGIKSWL REAMYVPPER PVAAAAALSL AVTDDVGAEP  240
PQLLPAAPMP PVHRKPAQTF GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV  300
YLGGYDREEK AARAYDLAAL KYWGPSTHIN FPLSHYEKEL EEMKHMSRQE FIAHLRRNSS  360
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  420
AVTNFDISKY DVKRICASTH LIGGGDACRR SPTQPPDAPA LAIDAAGADR SSDAPGGGDQ  480
AVSDNSDTSA GHRGAHLLHG LQYGHPMKLE AGEGSSWMAA ATAAAARPVA GVHQLPVFAL  540
WNDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G485200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307150.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1B6QQ670.0A0A1B6QQ67_SORBI; Uncharacterized protein
STRINGSb01g045420.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein