PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G481600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 523aa    MW: 56067.6 Da    PI: 4.8905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G481600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16326376155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr++  +grW+AeIr p     +  +r +lg++ t+eeAa+a+++ +++++g
  Sobic.001G481600.2.p 326 KKYRGVRRRQ-SGRWAAEIRNP-----QlgRRAWLGTYHTPEEAAQAYDREARRIRG 376
                           59*****888.8*********9.....556************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-28326384No hitNo description
PROSITE profilePS5103222.313327384IPR001471AP2/ERF domain
PfamPF008471.5E-9327376IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-19327385IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-28327384IPR001471AP2/ERF domain
SMARTSM003803.4E-32327390IPR001471AP2/ERF domain
PRINTSPR003678.4E-7328339IPR001471AP2/ERF domain
PRINTSPR003678.4E-7350366IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDLNESEPPP LAPAAAARSP PATSPLEAVS PPSSITTQLT THTSTELAAA PLPILTPPYL  60
TEEAEEVELV DWADADDIED EPQPTIDEEE AEKPAGLAME INPMTSAMLP RVSSVSVVGS  120
VGSSDAKREM TSIHLLQVRS MEDASIHSIH AESNDVHTRE SETPLFLCPC AAAALQRRPR  180
RRARGNDMCG GAILAELIPA RVHRPLTAST LWPAAGLRGT ITGGKRKADD DFDDFEDFET  240
EFQLFDDKEF DFDDDQEPSP PASPKAGGCA RKPKAAIAPP PAAAGTISQT TTTTTLQHGA  300
RARARARAPF SAGASTSTNP TTPRNKKYRG VRRRQSGRWA AEIRNPQLGR RAWLGTYHTP  360
EEAAQAYDRE ARRIRGKRAR LNFPLIPHQG PAPAPAPAPA PAPAPTPTPT PTPVAIDLNL  420
PPASDDLDDP ASAGDGDGKT GADGDAEMAG ESTLVRVQEL IAQGPRDERL VARIVPELMR  480
HGSRGEATAA DFSRQMEEIA ALRRDLETRE RQLVELVSQV LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-16324390269ATERF1
3gcc_A5e-16324390269ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181RRPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G481600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370714e-74BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465749.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A1Z5SB320.0A0A1Z5SB32_SORBI; Uncharacterized protein
STRINGSb01g045070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-16ERF family protein