PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G481400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 336aa    MW: 36658.5 Da    PI: 5.7938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G481400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18109158255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Sobic.001G481400.1.p 109 HFHGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158
                           689******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-31108167IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21109167IPR016177DNA-binding domain
SMARTSM003802.7E-35109172IPR001471AP2/ERF domain
PfamPF008478.5E-11109158IPR001471AP2/ERF domain
PROSITE profilePS5103222.682109166IPR001471AP2/ERF domain
CDDcd000181.91E-27109165No hitNo description
PRINTSPR003672.0E-10110121IPR001471AP2/ERF domain
PRINTSPR003672.0E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRVAPK PVTEGHLWPA SSKKAGSGSN KRHHHEYADD DDFEAAFEEF  60
DDDFDVHEDD EDHPDHFVFS SKSAFSPAHD GRRDARAAAS QRTKRGRRHF HGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAASA RPRARRGKGN  180
PRTAPKPAAQ AQPALLLRGE KGLEGVAVKP ETTMDMFDVG SFFDMTFPTF PAAPAAAMES  240
SFAGSSATSE TRSPGKKLRY DDGDSSEGSG CGSALELADE LAFDPFMLLQ MPYSGGYDSL  300
DGLFAAEAVQ QDVNNDMNGV SLWSFDEFPV DGYVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21108166463ATERF1
3gcc_A2e-21108166463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.22140.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G481400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393001e-162BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankEU9702441e-162EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269381e-162KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313148.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QQ350.0A0A1B6QQ35_SORBI; Uncharacterized protein
STRINGSb01g045060.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-27ERF family protein